SMTL ID : 2ixi.1

RmlC P aeruginosa with dTDP-xylose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)

TYD.1: 9 residues within 4Å: Chain A: Q.50, N.52, W.140, K.170 Chain B: F.22, R.26, F.29, E.31 Ligands: SRT.2 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:W.140, B:F.29 Hydrogen bonds: A:N.52, B:E.31, B:E.31 Water bridges: A:S.168, B:R.26 pi-Stacking: A:W.140, A:W.140 Salt bridges: B:R.26, B:R.26 TYD.3: 9 residues within 4Å: Chain A: F.22, R.26, F.29, E.31 Chain B: Q.50, N.52, W.140, S.168, K.170 16 PLIP interactions: 5 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:F.29, B:W.140 Hydrogen bonds: A:R.26, A:E.31, B:N.52, B:S.168 Water bridges: A:R.26, B:S.168, B:S.168, B:K.170, B:D.171 Salt bridges: A:R.26, B:K.170, B:K.170 pi-Stacking: B:W.140, B:W.140

1 x SRT: S,R MESO-TARTARIC ACID(Non-covalent)

SRT.2: 6 residues within 4Å: Chain A: H.65, K.74, H.121, Y.134 Chain B: F.29 Ligands: TYD.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.134, A:Y.134, A:Y.134 Water bridges: A:Y.134 Salt bridges: A:H.65, A:H.65, A:K.74, A:H.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Rmlc, a C3' and C5' Carbohydrate Epimerase, Appears to Operate Via an Intermediate with an Unusual Twist Boat Conformation. J.Mol.Biol. (2007)

Release Date

2006-07-11

Peptides

DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE

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