SMTL ID : 2ixk.1

RMLC P AERUGINOSA WITH DTDP-4-KETO RHAMNNOSE (THE PRODUCT OF THE REACTION)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x TDO: DTDP-4-KETO-L-RHAMNOSE(Non-covalent)

TDO.1: 13 residues within 4Å: Chain A: Q.50, N.52, R.62, H.65, K.74, H.121, Y.134, W.140, K.170 Chain B: F.22, R.26, F.29, E.31 23 PLIP interactions: 15 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:W.140, B:F.29 Hydrogen bonds: A:N.52, A:K.74, B:E.31, B:E.31 Water bridges: A:E.145, A:S.168, A:K.170, A:K.170, A:K.170, B:R.26, B:R.26 Salt bridges: A:R.62, A:H.65, A:H.65, A:K.170, A:K.170, B:R.26, B:R.26 pi-Stacking: A:W.140, A:W.140, B:F.29 TDO.2: 15 residues within 4Å: Chain A: F.22, R.26, F.29, E.31 Chain B: Q.50, N.52, R.62, H.65, K.74, H.121, F.123, Y.134, W.140, E.145, K.170 26 PLIP interactions: 8 interactions with chain A, 18 interactions with chain B Hydrophobic interactions: A:F.29, B:F.123, B:W.140 Hydrogen bonds: A:E.31, B:N.52, B:H.65, B:Q.72, B:K.74, B:H.121, B:Y.134 Water bridges: A:R.26, A:R.26, A:R.26, B:R.62, B:K.170, B:K.170 Salt bridges: A:R.26, A:R.26, B:R.62, B:H.65, B:H.65, B:K.170, B:K.170 pi-Stacking: A:F.29, B:W.140, B:W.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Rmlc, a C3' and C5' Carbohydrate Epimerase, Appears to Operate Via an Intermediate with an Unusual Twist Boat Conformation. J.Mol.Biol. (2007)

Release Date

2006-08-14

Peptides

DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE

Related Entries With Identical Sequence