SMTL ID : 2ixu.1

Crystal structure of the modular Cpl-1 endolysin complexed with a peptidoglycan analogue (wild-type endolysin)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

monomer

Ligands

1 x MUB- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-alpha-muramic acid(Non-covalent)

MUB-NAG.1: 10 residues within 4Å: Chain A: E.94, Y.125, S.126, Y.127, P.129, A.151, G.152, Y.153 Ligands: ALA.3, ZGL.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.151, A:Y.153 Hydrogen bonds: A:Y.153, A:Y.125 Water bridges: A:K.128, A:G.154, A:E.94, A:E.94, A:Y.153, A:Y.153

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 5 residues within 4Å: Chain A: S.12, S.13, K.34, Y.41, N.43 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.13, A:K.34

1 x ALA: ALANINE(Non-covalent)

ALA.3: 4 residues within 4Å: Chain A: Y.153, G.154 Ligands: MUB-NAG.1, ZGL.4 No protein-ligand interaction detected (PLIP)

1 x ZGL: D-alpha-glutamine(Non-covalent)

ZGL.4: 4 residues within 4Å: Chain A: G.154, Y.164 Ligands: MUB-NAG.1, ALA.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.154 Water bridges: A:Y.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perez-Dorado, I. et al., Elucidation of the Molecular Recognition of Bacterial Cell Wall by Modular Pneumococcal Phage Endolysin Cpl-1. J.Biol.Chem. (2007)

Release Date

2007-07-03

Peptides

LYSOZYME: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LYSOZYME