SMTL ID : 2iy8.1

Crystal structure of the sialyltransferase PM0188 with CMP-3FNeuAc and lactose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x BGC- GAL: beta-D-galactopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-GAL.1: 9 residues within 4Å: Chain A: P.10, A.11, R.39, H.88, D.117, M.120, W.246, R.289 Ligands: CSF.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.289, A:R.289, A:P.10, A:R.39, A:H.88, A:R.289 Water bridges: A:H.88

1 x CSF: CYTIDINE-5'-MONOPHOSPHATE-3-FLUORO-N-ACETYL-NEURAMINIC ACID(Non-covalent)

CSF.2: 24 residues within 4Å: Chain A: A.11, S.12, L.13, R.39, D.117, G.118, S.119, M.120, V.123, G.242, T.244, W.246, K.285, G.286, H.287, P.288, I.311, S.312, F.313, E.314, S.331, S.332, L.333 Ligands: BGC-GAL.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:V.123, A:H.287, A:L.333 Hydrogen bonds: A:S.12, A:S.119, A:S.119, A:G.242, A:K.285, A:K.285, A:H.287, A:F.313, A:E.314, A:E.314, A:S.332, A:S.332 Water bridges: A:S.12, A:S.119, A:S.119, A:T.243 Salt bridges: A:R.39, A:H.287, A:H.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, D.U. et al., Structural analysis of sialyltransferase PM0188 from Pasteurella multocida complexed with donor analogue and acceptor sugar. Bmb Rep (2008)

Release Date

2007-09-18

Peptides

PROTEIN PM0188: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN PM0188

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