SMTL ID : 2iya.2 (1 other biounit)

The crystal structure of macrolide glycosyltransferases: A blueprint for antibiotic engineering

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 18 residues within 4Å: Chain A: H.23, G.24, N.27, R.242, G.263, S.264, A.265, S.290, W.312, V.313, Q.315, H.328, G.330, M.331, G.332, S.333, E.336, Q.353 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.24, A:N.27, A:R.242, A:R.242, A:S.264, A:A.265, A:S.290, A:V.313, A:V.313, A:Q.315, A:Q.315, A:G.332, A:S.333, A:E.336 Water bridges: A:H.25, A:L.262, A:G.263, A:L.316, A:H.328, A:M.331, A:E.336, A:Q.353 Salt bridges: A:H.328, A:H.328 pi-Stacking: A:W.312

1 x ZIO: (3S,5R,6S,7R,8R,11R,12S,13R,14S,15S)-6-HYDROXY-5,7,8,11,13,15-HEXAMETHYL-4,10-DIOXO-14-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}-1,9-DIOXASPIRO[2.13]HEXADEC-12-YL 2,6-DIDEOXY-3-O-METHYL-ALPHA-L-ARABINO-HEXOPYRANOSIDE(Non-covalent)

ZIO.2: 23 residues within 4Å: Chain A: H.25, W.79, P.80, E.81, Q.83, A.86, M.87, F.90, I.117, A.118, W.120, T.139, F.140, A.142, F.146, V.150, V.153, L.207, A.265, I.350, A.351, E.352, M.355 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.79, A:T.139, A:F.140, A:F.146, A:V.150, A:L.207, A:E.352 Hydrogen bonds: A:Q.83, A:A.351, A:E.352

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bolam, D.N. et al., The Crystal Structure of Two Macrolide Glycosyltransferases Provides a Blueprint for Host Cell Antibiotic Immunity. Proc.Natl.Acad.Sci.USA (2007)

Release Date

2007-03-27

Peptides

OLEANDOMYCIN GLYCOSYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

OLEANDOMYCIN GLYCOSYLTRANSFERASE

Related Entries With Identical Sequence