SMTL ID : 2iyp.1 (1 other biounit)

product rup

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 23 residues within 4Å: Chain A: G.11, M.12, A.13, V.14, M.15, N.34, R.35, T.36, K.39, M.74, V.75, Q.76, A.77, A.80, T.84, G.102, N.103, V.128, G.131, K.185 Chain B: G.452, H.454 Ligands: 5RP.2 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:M.12, A:A.13, A:M.15, A:N.34, A:R.35, A:R.35, A:T.36, A:T.36, A:V.75, A:Q.76, A:N.103, A:N.103, B:G.452 Water bridges: A:A.77, A:G.131, A:K.263 Salt bridges: A:R.35, A:K.39 pi-Cation interactions: A:R.35

1 x 5RP: RIBULOSE-5-PHOSPHATE(Non-covalent)

5RP.2: 16 residues within 4Å: Chain A: N.103, K.185, H.188, N.189, E.192, Y.193, N.262, K.263, G.264, T.265, R.290, I.368 Chain B: R.448, F.451, H.454 Ligands: NAP.1 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.103, A:K.185, A:H.188, A:N.189, A:E.192, A:Y.193, A:K.263, A:T.265, A:T.265 Water bridges: A:G.130, A:T.265 Salt bridges: A:R.290, B:R.448, B:H.454

1 x A2P: ADENOSINE-2'-5'-DIPHOSPHATE(Non-covalent)

A2P.3: 11 residues within 4Å: Chain B: G.11, M.12, A.13, N.34, R.35, T.36, K.39, V.75, Q.76, A.80, T.84 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:M.12, B:A.13, B:N.34, B:R.35, B:T.36, B:T.36, B:T.36, B:Q.76, B:Q.76 Water bridges: B:R.35, B:T.36 Salt bridges: B:R.35, B:K.39 pi-Cation interactions: B:R.35, B:R.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundaramoorthy, R. et al., Crystal Structures of a Bacterial 6-Phosphogluconate Dehydrogenase Reveal Aspects of Specificity, Mechanism and Mode of Inhibition by Analogues of High-Energy Reaction Intermediates. FEBS J. (2007)

Release Date

2007-01-23

Peptides

6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

6-PHOSPHOGLUCONATE DEHYDROGENASE, DECARBOXYLATING

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