SMTL ID : 2iyq.1

Shikimate kinase from Mycobacterium tuberculosis in complex with shikimate and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.1: 12 residues within 4Å: Chain A: P.11, D.34, I.45, F.57, R.58, G.79, G.80, G.81, P.118, L.119, R.136 Ligands: TRS.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.34, A:G.80 Water bridges: A:D.34, A:R.58 Salt bridges: A:R.58, A:R.136

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: L.10, P.11, G.12, S.13, G.14, K.15, S.16, T.17, R.110, R.117, R.153, N.154, P.155 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:S.16, A:T.17, A:T.17, A:T.17, A:R.110, A:R.110, A:R.117, A:R.153 Water bridges: A:K.15, A:K.15, A:S.16, A:S.16, A:S.16, A:R.117, A:T.150, A:T.150 Salt bridges: A:K.15, A:R.117 pi-Cation interactions: A:R.110, A:R.110

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 6 residues within 4Å: Chain A: D.34, V.35, E.38, I.45, V.116 Ligands: SKM.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.34 Water bridges: A:D.34, A:E.38, A:N.114

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: R.66 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: V.28, G.29, H.72, G.74 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: R.66, A.90, A.91 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: N.114, T.115, V.116, R.117, A.121 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartmann, M.D. et al., Mechanism of Phosphoryl Transfer Catalyzed by Shikimate Kinase from Mycobacterium Tuberculosis. J.Mol.Biol. (2006)

Release Date

2006-10-11

Peptides

SHIKIMATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SHIKIMATE KINASE

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