SMTL ID : 2j1n.1

osmoporin OmpC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.319, L.321, T.334 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.319, A:L.321, A:T.334, H2O.6, H2O.6 MG.2: 3 residues within 4Å: Chain B: N.319, L.321, T.334 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:N.319, B:L.321, B:T.334, H2O.14, H2O.14 MG.5: 3 residues within 4Å: Chain C: N.319, L.321, T.334 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:L.321, C:T.334, H2O.22, H2O.22, H2O.22

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain B: T.47, D.48 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: N.69 Chain B: N.69 Chain C: N.69 Ligand excluded by PLIP

11 x D12: DODECANE(Non-covalent)(Non-functional Binders)

D12.6: 3 residues within 4Å: Chain C: Y.277, Q.279 Ligands: D12.8 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:Y.277 D12.7: 7 residues within 4Å: Chain C: I.193, G.194, G.223, G.224, A.236, Y.238, F.259 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.193, C:Y.238, C:F.259 D12.8: 2 residues within 4Å: Chain C: F.259 Ligands: D12.6 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.259 D12.9: 7 residues within 4Å: Chain C: G.182, I.184, G.195, A.196, I.197, T.222, G.223 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:I.184, C:I.197, C:I.197 D12.10: 9 residues within 4Å: Chain C: L.225, K.226, Y.227, L.234, A.261, V.262, L.275, A.276, Y.277 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:L.225, C:L.234, C:A.261, C:L.275, C:Y.277 D12.11: 2 residues within 4Å: Chain C: Y.94, Y.98 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.94, C:Y.98 D12.12: 4 residues within 4Å: Chain C: F.23, N.336, I.337, V.338 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.23, C:F.23, C:N.336, C:V.338 D12.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) D12.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) D12.15: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) D12.16: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Basle, A. et al., Crystal Structure of Osmoporin Ompc from E. Coli at 2.0 A. J.Mol.Biol. (2006)

Release Date

2006-09-06

Peptides

OUTER MEMBRANE PROTEIN C: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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OUTER MEMBRANE PROTEIN C

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