SMTL ID : 2j3l.1

Prolyl-tRNA synthetase from Enterococcus faecalis complexed with a prolyl-adenylate analogue ('5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

21 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: E.271, V.272, E.273, R.276 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: R.151, E.218, D.219, R.447 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: E.121, I.122, N.123, S.124, R.127 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: R.85, T.88, G.203, R.417 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: T.262, I.263 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: K.243, R.295 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: K.244, S.245, H.246, E.247 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: R.193, A.194 Ligand excluded by PLIP SO4.9: 1 residues within 4Å: Chain A: K.205 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: R.99 Chain B: P.91 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: T.262, I.263, K.279 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: E.271, V.272, E.273, R.276 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain B: R.151, E.218, D.219, R.447 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain B: I.122, N.123, S.124, R.127 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain B: R.85, T.88, G.200, G.203, R.417 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: D.166, E.167, K.434 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain B: R.193, A.194 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain B: E.167, K.205, G.415, T.416 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain B: R.48, E.502 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain B: R.144, R.151 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain B: K.243, R.295 Ligand excluded by PLIP

2 x P5A: '5'-O-(N-(L-PROLYL)-SULFAMOYL)ADENOSINE(Non-covalent)

P5A.11: 22 residues within 4Å: Chain A: T.109, E.111, R.140, E.142, L.150, R.151, G.152, F.155, M.157, D.159, Y.161, M.202, E.407, I.408, G.409, H.410, F.412, C.440, Y.441, G.442, G.444, R.447 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:D.159, A:F.412 Hydrogen bonds: A:E.111, A:R.140, A:R.140, A:E.142, A:E.142, A:G.152, A:E.407, A:G.409, A:G.444, A:R.447, A:R.447 Salt bridges: A:R.140, A:H.410 pi-Stacking: A:F.155, A:F.155 pi-Cation interactions: A:R.447, A:R.447 P5A.23: 20 residues within 4Å: Chain B: T.109, E.111, R.140, E.142, R.151, G.152, F.155, M.157, D.159, Y.161, M.202, E.407, I.408, G.409, H.410, F.412, Y.441, G.442, G.444, R.447 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:D.159, B:F.412 Hydrogen bonds: B:E.111, B:R.140, B:R.140, B:E.142, B:G.152, B:G.409, B:G.444, B:R.447, B:R.447 Water bridges: B:H.410 Salt bridges: B:R.140, B:H.410 pi-Stacking: B:F.155, B:F.155 pi-Cation interactions: B:R.447, B:R.447

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crepin, T. et al., Structures of Two Bacterial Prolyl-tRNA Synthetases with and without a Cis-Editing Domain. Structure (2006)

Release Date

2006-10-11

Peptides

PROLYL-TRNA SYNTHETASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROLYL-TRNA SYNTHETASE

Related Entries With Identical Sequence