SMTL ID : 2j4y.1

Crystal structure of a rhodopsin stabilizing mutant expressed in mammalian cells

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-dimer

Ligands

2 x RET: RETINAL(Covalent)

RET.1: 16 residues within 4Å: Chain A: E.114, A.118, T.119, G.122, E.123, E.182, C.188, G.189, I.190, Y.192, M.208, F.213, W.266, Y.269, A.293, K.297 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.118, A:I.190, A:F.213, A:W.266, A:Y.269, A:Y.269, A:K.297 RET.3: 16 residues within 4Å: Chain B: E.114, A.118, T.119, G.122, E.123, E.182, C.188, G.189, I.190, Y.192, M.208, F.213, W.266, Y.269, A.293, K.297 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:A.118, B:I.190, B:F.213, B:W.266, B:Y.269, B:Y.269, B:K.297

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: T.5, N.16, V.21 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain B: N.16, V.21 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Standfuss, J. et al., Crystal Structure of a Thermally Stable Rhodopsin Mutant. J.Mol.Biol. (2007)

Release Date

2007-09-25

Peptides

RHODOPSIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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RHODOPSIN

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