SMTL ID : 2j51.1

Crystal structure of Human STE20-like kinase bound to 5-Amino-3-((4-(aminosulfonyl)phenyl)amino) -N-(2,6-difluorophenyl)-1H-1,2,4-triazole- 1-carbothioamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: H.152, P.216, Y.219, K.220, V.223, T.287, T.288 Ligands: EDO.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.152, A:T.288 EDO.2: 8 residues within 4Å: Chain A: V.139, K.142, Q.143, V.299, D.300, S.301, N.302 Ligands: EDO.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.143, A:S.301 EDO.3: 6 residues within 4Å: Chain A: H.152, K.155, D.214, P.216, Y.219 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.155, A:K.155 EDO.4: 5 residues within 4Å: Chain A: P.94, N.95, Q.143, D.173 Ligands: EDO.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.95 Water bridges: A:P.94, A:Q.143, A:I.174 EDO.7: 8 residues within 4Å: Chain B: H.152, P.216, Y.219, K.220, V.223, T.287, T.288 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.288 EDO.8: 8 residues within 4Å: Chain B: V.139, K.142, Q.143, V.299, D.300, S.301, N.302 Ligands: EDO.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.143, B:S.301 EDO.9: 6 residues within 4Å: Chain B: H.152, K.155, D.214, P.216, Y.219 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.155, B:K.155 EDO.10: 5 residues within 4Å: Chain B: P.94, N.95, Q.143, D.173 Ligands: EDO.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.95 Water bridges: B:P.94, B:Q.143, B:I.174

2 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.5: 5 residues within 4Å: Chain A: L.243, R.247, L.250, K.251, K.254 No protein-ligand interaction detected (PLIP) SCN.11: 5 residues within 4Å: Chain B: L.243, R.247, L.250, K.251, K.254 No protein-ligand interaction detected (PLIP)

2 x DKI: 5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE(Non-covalent)

DKI.6: 13 residues within 4Å: Chain A: L.45, V.53, A.66, K.68, I.113, E.114, F.115, C.116, G.119, G.164, N.165, L.167, D.178 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.45, A:L.45, A:F.115, A:D.178 Hydrogen bonds: A:L.45, A:E.114, A:C.116, A:C.116 DKI.12: 13 residues within 4Å: Chain B: L.45, V.53, A.66, K.68, I.113, E.114, F.115, C.116, G.119, G.164, N.165, L.167, D.178 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.45, B:L.45, B:F.115, B:D.178 Hydrogen bonds: B:L.45, B:E.114, B:C.116, B:C.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pike, A.C.W. et al., Activation Segment Dimerization: A Mechanism for Kinase Autophosphorylation of Non-Consensus Sites. Embo J. (2008)

Release Date

2006-10-03

Peptides

STE20-LIKE SERINE/THREONINE-PROTEIN KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

STE20-LIKE SERINE/THREONINE-PROTEIN KINASE

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