SMTL ID : 2j58.1

THE STRUCTURE OF WZA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-octamer

Ligands

8 x OCT: N-OCTANE(Non-covalent)

OCT.1: 3 residues within 4Å: Chain A: P.326, W.330 Chain B: I.4 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.330, A:W.330, B:I.4 OCT.5: 3 residues within 4Å: Chain B: P.326, W.330 Chain G: I.4 No protein-ligand interaction detected (PLIP) OCT.9: 3 residues within 4Å: Chain C: P.326, W.330 Chain F: I.4 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain F Hydrophobic interactions: C:W.330, F:I.4 OCT.13: 2 residues within 4Å: Chain A: I.4 Chain D: W.330 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:I.4, D:W.330 OCT.17: 3 residues within 4Å: Chain D: I.4 Chain E: P.326, W.330 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain E Hydrophobic interactions: D:I.4, E:W.330 OCT.21: 4 residues within 4Å: Chain E: I.4 Chain F: P.326, R.329, W.330 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:R.329, F:W.330, E:I.4 OCT.25: 2 residues within 4Å: Chain G: W.330 Chain H: I.4 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain H Hydrophobic interactions: G:W.330, H:I.4, H:I.4 OCT.29: 3 residues within 4Å: Chain C: I.4 Chain H: P.326, W.330 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain H Hydrophobic interactions: C:I.4, C:I.4, H:W.330

8 x HEX: HEXANE(Non-covalent)

HEX.2: 2 residues within 4Å: Chain A: L.327, W.330 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.327, A:W.330, A:W.330 HEX.6: 3 residues within 4Å: Chain B: L.327, W.330 Chain G: L.337 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain G Hydrophobic interactions: B:L.327, B:W.330, B:W.330, G:L.337 HEX.10: 3 residues within 4Å: Chain C: L.327, W.330 Chain F: L.337 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain C Hydrophobic interactions: F:L.337, C:L.327, C:W.330, C:W.330 HEX.14: 4 residues within 4Å: Chain A: L.337, T.340 Chain D: L.327, W.330 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:W.330, D:W.330, A:L.337, A:T.340 HEX.18: 3 residues within 4Å: Chain E: P.326, L.327, W.330 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:P.326, E:L.327, E:W.330, E:W.330 HEX.22: 3 residues within 4Å: Chain E: L.337 Chain F: L.327, W.330 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain E Hydrophobic interactions: F:L.327, F:W.330, F:W.330, E:L.337 HEX.26: 3 residues within 4Å: Chain G: L.327, W.330 Chain H: L.337 4 PLIP interactions: 1 interactions with chain H, 3 interactions with chain G Hydrophobic interactions: H:L.337, G:L.327, G:W.330, G:W.330 HEX.30: 3 residues within 4Å: Chain C: L.337 Chain H: L.327, W.330 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain C Hydrophobic interactions: H:L.327, H:W.330, H:W.330, C:L.337

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: N.101, S.102 Chain D: T.120, V.121, S.122 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: A.147, R.149 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain A: T.120, V.121, S.122 Chain B: N.101, S.102 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain B: A.147, R.149 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain C: N.101, S.102 Chain H: T.120, V.121, S.122 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain C: A.147, R.149 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain D: N.101, S.102 Chain E: T.120, V.121, S.122 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain D: A.147, R.149 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain E: N.101, S.102 Chain F: Y.65, T.120, V.121, S.122 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain E: A.147, R.149 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain C: T.120, V.121, S.122 Chain F: N.101, S.102 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain F: A.147, R.149 Ligand excluded by PLIP SO4.27: 6 residues within 4Å: Chain B: Y.65, T.120, V.121, S.122 Chain G: N.101, S.102 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Chain G: S.94, A.147, R.149 Ligand excluded by PLIP SO4.31: 6 residues within 4Å: Chain G: Y.65, T.120, V.121, S.122 Chain H: N.101, S.102 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain H: A.147, F.148, R.149 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Wza the Translocon for E. Coli Capsular Polysaccharides Defines a New Class of Membrane Protein. Nature (2006)

Release Date

2006-11-06

Peptides

OUTER MEMBRANE LIPOPROTEIN WZA: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Membrane

We predict this structure to be a membrane protein.
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OUTER MEMBRANE LIPOPROTEIN WZA