SMTL ID : 2j5z.1

H-ficolin complexed to galactose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-trimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.159, D.161, S.163, S.165 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.161, A:S.163, A:S.165, H2O.5, H2O.5 CA.4: 4 residues within 4Å: Chain B: D.159, D.161, S.163, S.165 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.159, B:D.159, B:D.161, B:S.165, H2O.12 CA.5: 4 residues within 4Å: Chain C: D.159, D.161, S.163, S.165 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.161, C:S.163, C:S.165, H2O.18, H2O.18

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.2: 6 residues within 4Å: Chain A: V.171, S.179, C.180, Y.181, Y.199, V.209 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.180, A:Y.181, A:Y.181 Water bridges: A:S.179

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: E.88, H.91, G.124, E.125 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.125 Water bridges: A:H.91, A:E.125, A:V.126 Salt bridges: A:H.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garlatti, V. et al., Structural Insights Into the Innate Immune Recognition Specificities of L- and H-Ficolins. Embo J. (2007)

Release Date

2007-01-23

Peptides

FICOLIN-3: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

FICOLIN-3

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