SMTL ID : 2j68.1

Bacterial dynamin-like protein BDLP, GDP bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: D.77, K.79, R.80, G.81, K.82, S.83, T.84, S.97, R.209, N.238, A.239, D.241, Q.242, S.291, S.292, I.293 Chain B: E.245, S.246 19 PLIP interactions: 16 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:K.79, A:R.80, A:G.81, A:S.83, A:T.84, A:R.209, A:R.209, A:N.238, A:A.239, A:Q.242, A:S.292, A:I.293, B:S.246, B:S.246 Salt bridges: A:K.79, A:K.82, A:D.241, B:E.245 pi-Cation interactions: A:R.209 GDP.2: 18 residues within 4Å: Chain A: E.245, S.246 Chain B: D.77, K.79, R.80, G.81, K.82, S.83, T.84, S.97, R.209, N.238, A.239, D.241, Q.242, S.291, S.292, I.293 19 PLIP interactions: 16 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:K.79, B:R.80, B:G.81, B:S.83, B:T.84, B:R.209, B:R.209, B:N.238, B:A.239, B:Q.242, B:S.292, B:I.293, A:S.246, A:S.246 Salt bridges: B:K.79, B:K.82, B:D.241, A:E.245 pi-Cation interactions: B:R.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Low, H.H. et al., A Bacterial Dynamin-Like Protein. Nature (2006)

Release Date

2006-12-04

Peptides

BACTERIAL DYNAMIN-LIKE PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

BACTERIAL DYNAMIN-LIKE PROTEIN

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