SMTL ID : 2j6l.1 (1 other biounit)

Structure of aminoadipate-semialdehyde dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 27 residues within 4Å: Chain A: I.164, T.165, A.166, F.167, N.168, K.191, G.192, A.193, P.194, A.228, G.231, T.232, F.245, T.246, G.247, S.248, V.251, V.255, E.269, L.270, G.271, G.272, C.303, E.400, F.402, L.428, F.469 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.246 Hydrogen bonds: A:T.165, A:F.167, A:K.191, A:T.232, A:T.232, A:S.248, A:E.269, A:L.270, A:G.272, A:E.400 Water bridges: A:A.228, A:T.249, A:R.307, A:E.400 NAI.5: 27 residues within 4Å: Chain B: I.164, T.165, A.166, F.167, N.168, K.191, G.192, A.193, P.194, A.228, G.231, T.232, F.245, T.246, G.247, S.248, V.251, V.255, E.269, L.270, G.271, G.272, C.303, E.400, F.402, L.428, F.469 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:T.246 Hydrogen bonds: B:T.165, B:F.167, B:K.191, B:T.232, B:S.248, B:L.270, B:G.272, B:E.400 Water bridges: B:T.232, B:S.248, B:S.248, B:T.249, B:N.274, B:E.400, B:E.400 NAI.11: 28 residues within 4Å: Chain C: I.164, T.165, A.166, F.167, N.168, K.191, G.192, A.193, P.194, G.227, A.228, G.231, T.232, F.245, T.246, G.247, S.248, V.251, V.255, E.269, L.270, G.271, G.272, C.303, E.400, F.402, L.428, F.469 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:T.246 Hydrogen bonds: C:T.165, C:F.167, C:K.191, C:T.232, C:T.232, C:S.248, C:L.270, C:G.272, C:E.400 Water bridges: C:A.228, C:T.249, C:R.307, C:E.400, C:E.400 NAI.15: 26 residues within 4Å: Chain D: I.164, T.165, A.166, F.167, N.168, K.191, G.192, A.193, P.194, A.228, G.231, T.232, F.245, T.246, G.247, S.248, V.251, V.255, E.269, L.270, G.271, G.272, C.303, E.400, F.402, F.469 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:T.246 Hydrogen bonds: D:T.165, D:F.167, D:K.191, D:T.232, D:S.248, D:E.269, D:L.270, D:G.272, D:E.400 Water bridges: D:A.228, D:T.232, D:T.249, D:R.307, D:E.400

9 x BR: BROMIDE ION(Non-covalent)(Non-functional Binders)

BR.2: 3 residues within 4Å: Chain A: K.348, Q.349, S.352 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: F.293, P.459, S.461, G.462 Ligand excluded by PLIP BR.6: 4 residues within 4Å: Chain B: R.35, S.57, A.59 Ligands: BR.10 Ligand excluded by PLIP BR.7: 1 residues within 4Å: Chain B: M.353 Ligand excluded by PLIP BR.8: 4 residues within 4Å: Chain B: F.293, P.459, S.461, G.462 Ligand excluded by PLIP BR.10: 4 residues within 4Å: Chain B: S.57, V.58, A.59 Ligands: BR.6 Ligand excluded by PLIP BR.12: 5 residues within 4Å: Chain C: F.293, I.458, P.459, S.461, G.462 Ligand excluded by PLIP BR.14: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP BR.16: 4 residues within 4Å: Chain D: F.293, P.459, S.461, G.462 Ligand excluded by PLIP

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: M.375, R.377, P.378, G.379 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.377, A:R.377 Water bridges: A:K.348 NA.9: 4 residues within 4Å: Chain B: M.375, R.377, P.378, G.379 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.375 NA.13: 4 residues within 4Å: Chain C: K.348, M.375, R.377, G.379 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.348, C:M.375 NA.17: 4 residues within 4Å: Chain D: M.375, R.377, P.378, G.379 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:M.375 Water bridges: D:Y.381

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brocker, C. et al., Aldehyde Dehydrogenase 7A1 (Aldh7A1) is a Novel Enzyme Involved in Cellular Defense Against Hyperosmotic Stress. J.Biol.Chem. (2010)

Release Date

2006-10-12

Peptides

ALDEHYDE DEHYDROGENASE FAMILY 7 MEMBER A1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ALDEHYDE DEHYDROGENASE FAMILY 7 MEMBER A1

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