SMTL ID : 2j7m.1

Characterization of a Family 32 CBM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NDG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG-GAL-FUC.1: 8 residues within 4Å: Chain A: E.23, H.40, W.43, R.72, N.77, D.131, Q.132, F.139 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.23, A:R.72, A:E.23, A:H.40, A:R.72, A:R.72, A:Q.132, A:N.77, A:D.131, A:Q.132 Water bridges: A:D.74, A:D.74, A:Q.132, A:D.131, A:D.131, A:A.133

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: F.29, D.32, D.34, T.37, A.143 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:F.29, A:D.32, A:D.34, A:T.37, A:T.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ficko-Blean, E. et al., The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor. J.Biol.Chem. (2006)

Release Date

2006-10-16

Peptides

HYALURONIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HYALURONIDASE