SMTL ID : 2j7n.1

Structure of the RNAi polymerase from Neurospora crassa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.627, D.629, D.631 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.627, A:D.629, A:D.631, H2O.14, H2O.14 MG.2: 3 residues within 4Å: Chain B: D.627, D.629, D.631 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.627, B:D.629, B:D.631, H2O.30, H2O.30, H2O.30

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Q.955, L.967 Chain B: M.918, L.923, Y.951, Q.955 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.951 Hydrogen bonds: B:Q.955, A:Q.955 Water bridges: B:Q.955

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salgado, P.S. et al., The Structure of an Rnai Polymerase Links RNA Silencing and Transcription. Plos Biol. (2006)

Release Date

2006-12-13

Peptides

RNA-DEPENDENT RNA POLYMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RNA-DEPENDENT RNA POLYMERASE

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