SMTL ID : 2j7w.1

Dengue virus NS5 RNA dependent RNA polymerase domain complexed with 3' dGTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.447, H.449, C.463, C.582 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.447, A:H.449, A:C.463, A:C.582 ZN.2: 5 residues within 4Å: Chain A: E.172, H.176, C.181, G.182, C.184 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.172, A:H.176, A:C.181, A:C.184

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.3: 6 residues within 4Å: Chain A: S.445, R.464, R.472, T.529, W.530, S.531 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.445, A:R.464, A:T.529, A:W.530, A:S.531 Water bridges: A:T.528 Salt bridges: A:R.464, A:R.472, A:R.472

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 2 residues within 4Å: Chain A: P.557, W.558 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yap, T.L. et al., Crystal Structure of the Dengue Virus RNA- Dependent RNA Polymerase Catalytic Domain at 1.85 Angstrom Resolution. J.Virol. (2007)

Release Date

2007-03-13

Peptides

POLYPROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLYPROTEIN

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