SMTL ID : 2j7x.1

STRUCTURE OF ESTRADIOL-BOUND ESTROGEN RECEPTOR BETA LBD IN COMPLEX WITH LXXLL MOTIF FROM NCOA5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EST: ESTRADIOL(Non-covalent)

EST.1: 14 residues within 4Å: Chain A: M.41, L.44, L.47, E.51, M.82, L.85, M.86, L.89, R.92, F.102, I.122, G.218, H.221, L.222 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.47, A:L.85, A:L.89, A:I.122, A:H.221, A:L.222 Hydrogen bonds: A:E.51, A:R.92, A:H.221 Water bridges: A:R.92 pi-Stacking: A:F.102

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: E.22, G.88, W.91, R.92, Y.143, K.147 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.22, A:G.88, A:R.92, A:K.147 EDO.3: 6 residues within 4Å: Chain A: P.23, N.25, E.51, R.92 Ligands: EDO.2, BCT.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.25, A:E.51, A:E.51, A:R.92 EDO.4: 4 residues within 4Å: Chain A: W.91, I.94, D.95, H.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.91, A:H.140 Water bridges: A:D.95 EDO.5: 4 residues within 4Å: Chain A: D.49, V.233, Y.234, D.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.234, A:D.235 Water bridges: A:D.49

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 2 residues within 4Å: Chain A: S.69, L.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.70 Water bridges: A:S.69, A:L.71

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.7: 9 residues within 4Å: Chain A: N.25, V.26, L.47, E.51, R.92, F.102, A.103, P.104 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.25, A:V.26, A:F.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pike, A.C.W. et al., Structure of Agonist-Bound Estrogen Receptor Beta Lbd in Complex with Lxxll Motif from Ncoa5. To be Published

Release Date

2006-11-07

Peptides

ESTROGEN RECEPTOR BETA: A
NUCLEAR RECEPTOR COACTIVATOR 5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ESTROGEN RECEPTOR BETA

NUCLEAR RECEPTOR COACTIVATOR 5

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