SMTL ID : 2j97.1

Human coronavirus 229E non structural protein 9 (Nsp9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 6 residues within 4Å: Chain A: V.11, N.27, L.29, T.105, V.106 Ligands: SO4.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.11, A:L.29, A:T.105, A:V.106 Hydrogen bonds: A:N.27 MPD.4: 6 residues within 4Å: Chain B: V.11, N.27, L.29, T.105, V.106 Ligands: SO4.5 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.11, B:L.29, B:T.105, B:V.106 Hydrogen bonds: B:N.27

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: N.27, V.43, T.44, T.45, K.82 Ligands: MPD.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.27, A:V.43 Salt bridges: A:K.82 SO4.3: 2 residues within 4Å: Chain A: D.19, K.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.19 Salt bridges: A:K.50 SO4.5: 6 residues within 4Å: Chain B: N.27, V.43, T.44, T.45, K.82 Ligands: MPD.4 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.27, B:V.43 Salt bridges: B:K.82 SO4.6: 2 residues within 4Å: Chain B: D.19, K.50 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.19 Salt bridges: B:K.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ponnusamy, R. et al., Variable Oligomerization Modes in Coronavirus Non-Structural Protein 9. J.Mol.Biol. (2008)

Release Date

2007-11-27

Peptides

REPLICASE POLYPROTEIN 1AB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

REPLICASE POLYPROTEIN 1AB