- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ALA- MLE- TYR- TYR: MICROGININ FR1(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.2: 4 residues within 4Å:- Chain A: A.333, G.335, R.336, L.360
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain B: A.333, G.335, R.336, L.360
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain C: A.333, G.335, R.336, L.360
Ligand excluded by PLIPCL.32: 4 residues within 4Å:- Chain D: A.333, G.335, R.336, L.360
Ligand excluded by PLIPCL.42: 4 residues within 4Å:- Chain E: A.333, G.335, R.336, L.360
Ligand excluded by PLIPCL.52: 4 residues within 4Å:- Chain F: A.333, G.335, R.336, L.360
Ligand excluded by PLIP- 18 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.3: 6 residues within 4Å:- Chain A: A.48, W.82, E.87, N.88, A.91, P.461
Ligand excluded by PLIPMPD.4: 8 residues within 4Å:- Chain A: H.233, Y.234, K.235, P.244, N.295, I.296, V.297, F.349
Ligand excluded by PLIPMPD.5: 7 residues within 4Å:- Chain A: P.44, L.46, T.51, R.52
- Chain F: Q.99, D.102, L.103
Ligand excluded by PLIPMPD.13: 6 residues within 4Å:- Chain B: A.48, W.82, E.87, N.88, A.91, P.461
Ligand excluded by PLIPMPD.14: 8 residues within 4Å:- Chain B: H.233, Y.234, K.235, P.244, N.295, I.296, V.297, F.349
Ligand excluded by PLIPMPD.15: 7 residues within 4Å:- Chain B: P.44, L.46, T.51, R.52
- Chain E: Q.99, D.102, L.103
Ligand excluded by PLIPMPD.23: 6 residues within 4Å:- Chain C: A.48, W.82, E.87, N.88, A.91, P.461
Ligand excluded by PLIPMPD.24: 8 residues within 4Å:- Chain C: H.233, Y.234, K.235, P.244, N.295, I.296, V.297, F.349
Ligand excluded by PLIPMPD.25: 7 residues within 4Å:- Chain C: P.44, L.46, T.51, R.52
- Chain D: Q.99, D.102, L.103
Ligand excluded by PLIPMPD.33: 6 residues within 4Å:- Chain D: A.48, W.82, E.87, N.88, A.91, P.461
Ligand excluded by PLIPMPD.34: 8 residues within 4Å:- Chain D: H.233, Y.234, K.235, P.244, N.295, I.296, V.297, F.349
Ligand excluded by PLIPMPD.35: 7 residues within 4Å:- Chain C: Q.99, D.102, L.103
- Chain D: P.44, L.46, T.51, R.52
Ligand excluded by PLIPMPD.43: 6 residues within 4Å:- Chain E: A.48, W.82, E.87, N.88, A.91, P.461
Ligand excluded by PLIPMPD.44: 8 residues within 4Å:- Chain E: H.233, Y.234, K.235, P.244, N.295, I.296, V.297, F.349
Ligand excluded by PLIPMPD.45: 7 residues within 4Å:- Chain B: Q.99, D.102, L.103
- Chain E: P.44, L.46, T.51, R.52
Ligand excluded by PLIPMPD.53: 6 residues within 4Å:- Chain F: A.48, W.82, E.87, N.88, A.91, P.461
Ligand excluded by PLIPMPD.54: 8 residues within 4Å:- Chain F: H.233, Y.234, K.235, P.244, N.295, I.296, V.297, F.349
Ligand excluded by PLIPMPD.55: 7 residues within 4Å:- Chain A: Q.99, D.102, L.103
- Chain F: P.44, L.46, T.51, R.52
Ligand excluded by PLIP- 12 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.6: 9 residues within 4Å:- Chain A: Q.79, N.81, W.398
- Chain B: T.377, R.399, M.400, P.401, L.402, F.403
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.402
- Water bridges: B:R.399
DMS.7: 4 residues within 4Å:- Chain A: V.317, R.319
- Chain E: L.133, N.176
No protein-ligand interaction detected (PLIP)DMS.16: 9 residues within 4Å:- Chain A: T.377, R.399, M.400, P.401, L.402, F.403
- Chain B: Q.79, N.81, W.398
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.402
- Water bridges: A:R.399
DMS.17: 4 residues within 4Å:- Chain B: V.317, R.319
- Chain F: L.133, N.176
No protein-ligand interaction detected (PLIP)DMS.26: 9 residues within 4Å:- Chain C: Q.79, N.81, W.398
- Chain E: T.377, R.399, M.400, P.401, L.402, F.403
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:L.402
- Water bridges: E:R.399
DMS.27: 4 residues within 4Å:- Chain B: L.133, N.176
- Chain C: V.317, R.319
No protein-ligand interaction detected (PLIP)DMS.36: 9 residues within 4Å:- Chain D: Q.79, N.81, W.398
- Chain F: T.377, R.399, M.400, P.401, L.402, F.403
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:L.402
- Water bridges: F:R.399
DMS.37: 4 residues within 4Å:- Chain A: L.133, N.176
- Chain D: V.317, R.319
No protein-ligand interaction detected (PLIP)DMS.46: 9 residues within 4Å:- Chain C: T.377, R.399, M.400, P.401, L.402, F.403
- Chain E: Q.79, N.81, W.398
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.402
- Water bridges: C:R.399
DMS.47: 4 residues within 4Å:- Chain D: L.133, N.176
- Chain E: V.317, R.319
No protein-ligand interaction detected (PLIP)DMS.56: 9 residues within 4Å:- Chain D: T.377, R.399, M.400, P.401, L.402, F.403
- Chain F: Q.79, N.81, W.398
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:L.402
- Water bridges: D:R.399
DMS.57: 4 residues within 4Å:- Chain C: L.133, N.176
- Chain F: V.317, R.319
No protein-ligand interaction detected (PLIP)- 12 x ZN: ZINC ION(Non-covalent)
ZN.8: 5 residues within 4Å:- Chain A: D.255, D.332, E.334
- Ligands: ZN.9, AHY.10
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.255, A:D.332, A:D.332, A:E.334
ZN.9: 6 residues within 4Å:- Chain A: K.250, D.255, D.273, E.334
- Ligands: ZN.8, AHY.10
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.255, A:D.273, A:D.273, A:E.334
ZN.18: 5 residues within 4Å:- Chain B: D.255, D.332, E.334
- Ligands: ZN.19, AHY.20
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.255, B:D.332, B:D.332, B:E.334
ZN.19: 6 residues within 4Å:- Chain B: K.250, D.255, D.273, E.334
- Ligands: ZN.18, AHY.20
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.255, B:D.273, B:D.273, B:E.334
ZN.28: 5 residues within 4Å:- Chain C: D.255, D.332, E.334
- Ligands: ZN.29, AHY.30
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.255, C:D.332, C:D.332, C:E.334
ZN.29: 6 residues within 4Å:- Chain C: K.250, D.255, D.273, E.334
- Ligands: ZN.28, AHY.30
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.255, C:D.273, C:D.273, C:E.334
ZN.38: 5 residues within 4Å:- Chain D: D.255, D.332, E.334
- Ligands: ZN.39, AHY.40
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.255, D:D.332, D:D.332, D:E.334
ZN.39: 6 residues within 4Å:- Chain D: K.250, D.255, D.273, E.334
- Ligands: ZN.38, AHY.40
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.255, D:D.273, D:D.273, D:E.334
ZN.48: 5 residues within 4Å:- Chain E: D.255, D.332, E.334
- Ligands: ZN.49, AHY.50
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.255, E:D.332, E:D.332, E:E.334
ZN.49: 6 residues within 4Å:- Chain E: K.250, D.255, D.273, E.334
- Ligands: ZN.48, AHY.50
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.255, E:D.273, E:D.273, E:E.334
ZN.58: 5 residues within 4Å:- Chain F: D.255, D.332, E.334
- Ligands: ZN.59, AHY.60
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.255, F:D.332, F:D.332, F:E.334
ZN.59: 6 residues within 4Å:- Chain F: K.250, D.255, D.273, E.334
- Ligands: ZN.58, AHY.60
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:D.255, F:D.273, F:D.273, F:E.334
- 6 x AHY: (2S,3R)-3-AMINO-2-HYDROXYDECANOIC ACID(Non-covalent)
AHY.10: 17 residues within 4Å:- Chain A: K.250, D.255, K.262, M.270, D.273, D.332, E.334, T.359, L.360, G.362, D.365, A.451
- Chain B: R.425
- Ligands: ALA-MLE-TYR-TYR.1, ALA-MLE-TYR-TYR.1, ZN.8, ZN.9
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:D.365
- Hydrogen bonds: A:K.262, A:T.359
- Water bridges: A:E.334
AHY.20: 17 residues within 4Å:- Chain A: R.425
- Chain B: K.250, D.255, K.262, M.270, D.273, D.332, E.334, T.359, L.360, G.362, D.365, A.451
- Ligands: ALA-MLE-TYR-TYR.11, ALA-MLE-TYR-TYR.11, ZN.18, ZN.19
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:D.365
- Hydrogen bonds: B:K.262, B:T.359
- Water bridges: B:E.334
AHY.30: 17 residues within 4Å:- Chain C: K.250, D.255, K.262, M.270, D.273, D.332, E.334, T.359, L.360, G.362, D.365, A.451
- Chain E: R.425
- Ligands: ALA-MLE-TYR-TYR.21, ALA-MLE-TYR-TYR.21, ZN.28, ZN.29
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:D.365
- Hydrogen bonds: C:K.262, C:T.359
- Water bridges: C:E.334
AHY.40: 17 residues within 4Å:- Chain D: K.250, D.255, K.262, M.270, D.273, D.332, E.334, T.359, L.360, G.362, D.365, A.451
- Chain F: R.425
- Ligands: ALA-MLE-TYR-TYR.31, ALA-MLE-TYR-TYR.31, ZN.38, ZN.39
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:D.365
- Hydrogen bonds: D:K.262, D:T.359
- Water bridges: D:E.334
AHY.50: 17 residues within 4Å:- Chain C: R.425
- Chain E: K.250, D.255, K.262, M.270, D.273, D.332, E.334, T.359, L.360, G.362, D.365, A.451
- Ligands: ALA-MLE-TYR-TYR.41, ALA-MLE-TYR-TYR.41, ZN.48, ZN.49
4 PLIP interactions:4 interactions with chain E- Hydrophobic interactions: E:D.365
- Hydrogen bonds: E:K.262, E:T.359
- Water bridges: E:E.334
AHY.60: 17 residues within 4Å:- Chain D: R.425
- Chain F: K.250, D.255, K.262, M.270, D.273, D.332, E.334, T.359, L.360, G.362, D.365, A.451
- Ligands: ALA-MLE-TYR-TYR.51, ALA-MLE-TYR-TYR.51, ZN.58, ZN.59
4 PLIP interactions:4 interactions with chain F- Hydrophobic interactions: F:D.365
- Hydrogen bonds: F:K.262, F:T.359
- Water bridges: F:E.334
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kraft, M. et al., Binding Structure of the Leucine Aminopeptidase Inhibitor Microginin Fr1. FEBS Lett. (2006)
- Release Date
- 2006-12-06
- Peptides
- CYTOSOL AMINOPEPTIDASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.73 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ALA- MLE- TYR- TYR: MICROGININ FR1(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 18 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 12 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 12 x ZN: ZINC ION(Non-covalent)
- 6 x AHY: (2S,3R)-3-AMINO-2-HYDROXYDECANOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kraft, M. et al., Binding Structure of the Leucine Aminopeptidase Inhibitor Microginin Fr1. FEBS Lett. (2006)
- Release Date
- 2006-12-06
- Peptides
- CYTOSOL AMINOPEPTIDASE: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A