SMTL ID : 2j9l.1

Cytoplasmic Domain of the Human Chloride Transporter ClC-5 in complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 13 residues within 4Å: Chain A: K.18, L.26, T.27, T.47, Y.48, S.49, G.50, F.51, P.52, I.153, T.155, K.157, D.158 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:S.49, A:S.49, A:S.49, A:T.155, A:T.155, A:D.158 Water bridges: A:T.47, A:Y.48, A:G.50 Salt bridges: A:K.157 pi-Stacking: A:Y.48, A:Y.48 ATP.3: 11 residues within 4Å: Chain B: K.18, L.26, T.27, Y.48, S.49, G.50, P.52, I.153, T.155, K.157, D.158 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:S.49, B:S.49, B:S.49, B:T.155, B:D.158 Water bridges: B:G.50, B:T.155, B:D.158 Salt bridges: B:K.157, B:K.157 pi-Stacking: B:Y.48, B:Y.48 ATP.6: 13 residues within 4Å: Chain C: K.18, L.26, T.27, T.47, Y.48, S.49, G.50, F.51, P.52, I.153, T.155, K.157, D.158 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:S.49, C:S.49, C:S.49, C:T.155, C:D.158 Water bridges: C:Y.48, C:Y.48, C:G.50, C:T.155, C:K.156 Salt bridges: C:K.157, C:K.157 pi-Stacking: C:Y.48, C:Y.48 ATP.8: 12 residues within 4Å: Chain D: K.18, L.26, T.27, T.47, Y.48, S.49, G.50, P.52, I.153, T.155, K.157, D.158 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:K.18, D:T.27, D:T.27, D:S.49, D:S.49, D:S.49, D:T.155, D:T.155, D:D.158 Water bridges: D:Y.48, D:G.50 Salt bridges: D:K.157, D:K.157 pi-Stacking: D:Y.48, D:Y.48 ATP.12: 13 residues within 4Å: Chain E: K.18, L.26, T.27, T.47, Y.48, S.49, G.50, F.51, P.52, I.153, T.155, K.157, D.158 18 PLIP interactions: 18 interactions with chain E Hydrogen bonds: E:T.27, E:T.27, E:S.49, E:S.49, E:T.155, E:T.155, E:D.158 Water bridges: E:Y.48, E:Y.48, E:S.49, E:S.49, E:K.156, E:D.158, E:K.161 Salt bridges: E:K.157, E:K.157 pi-Stacking: E:Y.48, E:Y.48 ATP.14: 12 residues within 4Å: Chain F: K.18, L.26, T.27, T.47, Y.48, S.49, G.50, P.52, I.153, T.155, K.157, D.158 15 PLIP interactions: 15 interactions with chain F Hydrogen bonds: F:T.27, F:T.27, F:T.27, F:S.49, F:S.49, F:S.49, F:D.158 Water bridges: F:Y.48, F:G.50, F:K.156, F:K.157 Salt bridges: F:K.157, F:K.157 pi-Stacking: F:Y.48, F:Y.48

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.149 Chain B: R.149 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: N.147 Chain B: R.61 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.61 Chain B: N.147 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain C: N.147, R.149 Chain D: R.61 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: R.149 Chain D: R.149 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain D: R.20, R.21 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain C: R.61 Chain D: N.147 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain E: R.61 Chain F: N.147 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain F: R.61 Ligand excluded by PLIP CL.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meyer, S. et al., Nucleotide Recognition by the Cytoplasmic Domain of the Human Chloride Transporter Clc-5. Nat.Struct.Mol.Biol. (2006)

Release Date

2007-01-04

Peptides

CHLORIDE CHANNEL PROTEIN 5: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

CHLORIDE CHANNEL PROTEIN 5

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