SMTL ID : 2jah.1

BIOCHEMICAL AND STRUCTURAL ANALYSIS OF THE CLAVULANIC ACID DEHYDEOGENASE (CAD) FROM STREPTOMYCES CLAVULIGERUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 29 residues within 4Å: Chain A: G.14, A.15, S.16, S.17, G.18, I.19, A.38, R.39, R.40, L.63, D.64, V.65, N.91, A.92, G.93, I.94, T.114, M.140, S.141, S.142, Y.155, K.159, P.185, G.186, T.187, T.188, T.190, E.191, L.192 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:P.185, A:L.192 Hydrogen bonds: A:G.14, A:S.16, A:S.16, A:S.17, A:S.17, A:S.17, A:I.19, A:R.39, A:R.40, A:R.40, A:D.64, A:D.64, A:V.65, A:N.91, A:N.91, A:G.93, A:Y.155, A:K.159, A:T.188, A:T.188, A:T.190, A:E.191, A:L.192 Water bridges: A:G.20, A:R.39, A:R.39, A:R.40, A:T.190, A:Y.205 Salt bridges: A:R.39, A:R.40 pi-Cation interactions: A:R.39 NDP.2: 29 residues within 4Å: Chain B: G.14, A.15, S.16, S.17, G.18, I.19, A.38, R.39, R.40, L.63, D.64, V.65, N.91, A.92, G.93, I.94, T.114, M.140, S.141, S.142, Y.155, K.159, P.185, G.186, T.187, T.188, T.190, E.191, L.192 34 PLIP interactions: 34 interactions with chain B Hydrophobic interactions: B:P.185, B:L.192 Hydrogen bonds: B:S.16, B:S.16, B:S.17, B:S.17, B:S.17, B:S.17, B:I.19, B:R.39, B:R.40, B:R.40, B:D.64, B:V.65, B:N.91, B:N.91, B:G.93, B:K.159, B:T.188, B:T.188, B:T.190, B:T.190, B:E.191, B:L.192 Water bridges: B:G.20, B:R.39, B:R.39, B:R.39, B:T.190, B:E.191, B:E.191 Salt bridges: B:R.39, B:R.40 pi-Cation interactions: B:R.39 NDP.3: 28 residues within 4Å: Chain C: G.14, A.15, S.16, S.17, G.18, I.19, A.38, R.39, R.40, L.63, D.64, V.65, N.91, A.92, G.93, T.114, M.140, S.141, S.142, Y.155, K.159, P.185, G.186, T.187, T.188, T.190, E.191, L.192 35 PLIP interactions: 35 interactions with chain C Hydrophobic interactions: C:P.185, C:L.192 Hydrogen bonds: C:S.16, C:S.16, C:S.17, C:S.17, C:S.17, C:S.17, C:I.19, C:R.39, C:R.40, C:R.40, C:D.64, C:D.64, C:V.65, C:N.91, C:N.91, C:G.93, C:Y.155, C:K.159, C:T.188, C:T.188, C:T.190, C:E.191, C:L.192 Water bridges: C:G.20, C:R.39, C:R.39, C:R.40, C:R.40, C:H.195, C:Y.205 Salt bridges: C:R.39, C:R.40 pi-Cation interactions: C:R.39 NDP.4: 27 residues within 4Å: Chain D: G.14, S.16, S.17, G.18, I.19, A.38, R.39, R.40, L.63, D.64, V.65, N.91, A.92, G.93, T.114, M.140, S.141, S.142, Y.155, K.159, P.185, G.186, T.187, T.188, T.190, E.191, L.192 30 PLIP interactions: 30 interactions with chain D Hydrophobic interactions: D:P.185, D:L.192 Hydrogen bonds: D:S.16, D:S.16, D:S.17, D:S.17, D:S.17, D:S.17, D:I.19, D:R.39, D:R.40, D:R.40, D:D.64, D:V.65, D:N.91, D:N.91, D:G.93, D:K.159, D:T.188, D:T.188, D:T.190, D:T.190, D:E.191, D:L.192 Water bridges: D:G.20, D:R.39, D:T.114 Salt bridges: D:R.39, D:R.40 pi-Cation interactions: D:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mackenzie, A.K. et al., Clavulanic Acid Dehydrogenase: Structural and Biochemical Analysis of the Final Step in the Biosynthesis of the Beta-Lactamase Inhibitor Clavulanic Acid. Biochemistry (2007)

Release Date

2007-02-20

Peptides

CLAVULANIC ACID DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

CLAVULANIC ACID DEHYDROGENASE

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