SMTL ID : 2jb6.1 (1 other biounit)

Fab fragment in complex with small molecule hapten, crystal form-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-2-2-mer

Ligands

2 x T5C: 2-{(1E,3Z,5E,7E)-7-[3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-1,3-DIHYDRO-2H-INDOL-2-YLIDENE]-4-METHYLHEPTA-1,3,5-TRIEN-1-YL}-3,3-DIMETHYL-5-SULFO-1-(2-SULFOETHYL)-3H-INDOLIUM(Non-covalent)

T5C.1: 34 residues within 4Å: Chain A: Y.34, V.35, S.36, Y.51, G.52, W.93, L.97 Chain B: Y.32, A.33, N.35, N.50, E.52, Y.99, M.101, K.104, L.106 Chain C: N.33, Y.34, V.35, S.36, Y.51, G.52, W.93, L.97 Chain D: Y.32, A.33, N.35, N.50, E.52, Y.99, M.101, K.104, L.106 Ligands: T5C.2 26 PLIP interactions: 7 interactions with chain B, 5 interactions with chain C, 9 interactions with chain D, 5 interactions with chain A Hydrophobic interactions: B:Y.32, B:Y.99, B:Y.99, B:L.106, C:L.97, D:Y.99, D:Y.99, D:L.106, A:L.97 Hydrogen bonds: B:A.33, B:N.35, C:G.52, D:A.33, D:N.35, D:N.50, D:E.52, A:G.52 Salt bridges: B:K.104, D:K.104 Water bridges: C:S.36, D:Y.99, A:S.36, A:S.36 pi-Stacking: C:W.93, C:W.93, A:W.93 T5C.2: 34 residues within 4Å: Chain A: N.33, Y.34, V.35, S.36, Y.51, G.52, W.93, L.97 Chain B: Y.32, A.33, N.35, N.50, E.52, Y.99, M.101, K.104, L.106 Chain C: Y.34, V.35, S.36, Y.51, G.52, W.93, L.97 Chain D: Y.32, A.33, N.35, N.50, E.52, Y.99, M.101, K.104, L.106 Ligands: T5C.1 26 PLIP interactions: 7 interactions with chain B, 4 interactions with chain C, 9 interactions with chain D, 6 interactions with chain A Hydrophobic interactions: B:Y.99, B:Y.99, B:L.106, C:L.97, D:Y.32, D:Y.99, D:Y.99, D:L.106, A:L.97 Hydrogen bonds: B:A.33, B:N.35, B:N.50, C:G.52, D:A.33, D:N.35, D:E.52, A:G.52 Salt bridges: B:K.104, D:K.104 Water bridges: C:S.36, D:Y.99, A:S.36, A:S.36 pi-Stacking: C:W.93, A:W.93, A:W.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hillig, R.C. et al., Fab Mor03268 Triggers Absorption Shift of a Diagnostic Dye Via Packaging in a Solvent-Shielded Fab Dimer Interface. J.Mol.Biol. (2008)

Release Date

2008-01-08

Peptides

FAB FRAGMENT MOR03268 LIGHT CHAIN: AC
FAB FRAGMENT MOR03268 HEAVY CHAIN: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

FAB FRAGMENT MOR03268 LIGHT CHAIN

FAB FRAGMENT MOR03268 HEAVY CHAIN

Related Entries With Identical Sequence