SMTL ID : 2jb7.1

PAE2307 with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-hexamer

Ligands

6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 11 residues within 4Å: Chain A: N.17, W.92, I.94, T.113, A.114, N.115, V.160, Y.162 Chain C: H.24, F.25, S.53 15 PLIP interactions: 11 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:N.17, A:T.113, A:A.114, A:N.115, A:N.115, A:Y.162, A:Y.162, C:S.53 Water bridges: A:N.115, C:S.53 pi-Stacking: A:W.92, A:W.92, A:W.92, C:F.25, C:F.25 AMP.3: 11 residues within 4Å: Chain A: H.24, F.25, S.53 Chain B: N.17, W.92, I.94, T.113, A.114, N.115, V.160, Y.162 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:N.17, B:A.114, B:N.115, B:N.115, B:Y.162, A:S.53 pi-Stacking: B:W.92, B:W.92, B:W.92, A:F.25, A:F.25 Water bridges: A:I.26 AMP.6: 11 residues within 4Å: Chain B: H.24, F.25, S.53 Chain C: N.17, W.92, I.94, T.113, A.114, N.115, V.160, Y.162 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:N.17, C:T.113, C:A.114, C:N.115, C:N.115, C:Y.162, B:S.53 pi-Stacking: C:W.92, C:W.92, C:W.92, B:F.25, B:F.25 AMP.8: 11 residues within 4Å: Chain D: N.17, W.92, I.94, T.113, A.114, N.115, V.160, Y.162 Chain F: H.24, F.25, S.53 15 PLIP interactions: 11 interactions with chain D, 4 interactions with chain F Hydrogen bonds: D:N.17, D:T.113, D:A.114, D:N.115, D:N.115, D:Y.162, D:Y.162, F:S.53 Water bridges: D:N.115, F:S.53 pi-Stacking: D:W.92, D:W.92, D:W.92, F:F.25, F:F.25 AMP.10: 11 residues within 4Å: Chain D: H.24, F.25, S.53 Chain E: N.17, W.92, I.94, T.113, A.114, N.115, V.160, Y.162 12 PLIP interactions: 8 interactions with chain E, 4 interactions with chain D Hydrogen bonds: E:N.17, E:A.114, E:N.115, E:N.115, E:Y.162, D:S.53 pi-Stacking: E:W.92, E:W.92, E:W.92, D:F.25, D:F.25 Water bridges: D:I.26 AMP.13: 11 residues within 4Å: Chain E: H.24, F.25, S.53 Chain F: N.17, W.92, I.94, T.113, A.114, N.115, V.160, Y.162 12 PLIP interactions: 9 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:N.17, F:T.113, F:A.114, F:N.115, F:N.115, F:Y.162, E:S.53 pi-Stacking: F:W.92, F:W.92, F:W.92, E:F.25, E:F.25

6 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 6 residues within 4Å: Chain A: Q.14, G.15, N.90, A.91, W.92 Chain E: P.41 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.14, A:G.15, A:N.90 Water bridges: A:T.16, A:N.90 pi-Cation interactions: A:W.92 EPE.5: 6 residues within 4Å: Chain B: Q.14, G.15, N.90, A.91, W.92 Chain D: P.41 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.90 Water bridges: B:N.90 EPE.7: 5 residues within 4Å: Chain C: G.15, N.90, A.91, W.92 Chain F: P.41 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.90 Water bridges: C:G.15, C:N.90 EPE.9: 6 residues within 4Å: Chain B: P.41 Chain D: Q.14, G.15, N.90, A.91, W.92 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:Q.14, D:G.15, D:N.90 Water bridges: D:T.16, D:N.90 pi-Cation interactions: D:W.92 EPE.12: 6 residues within 4Å: Chain A: P.41 Chain E: Q.14, G.15, N.90, A.91, W.92 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.90 Water bridges: E:N.90 EPE.14: 5 residues within 4Å: Chain C: P.41 Chain F: G.15, N.90, A.91, W.92 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.90 Water bridges: F:G.15, F:N.90

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: R.108 Chain B: R.108, I.109 Chain C: R.108, I.109 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 1 interactions with chain C Salt bridges: A:R.108, B:R.108, C:R.108 Hydrophobic interactions: B:R.108 ACT.11: 5 residues within 4Å: Chain D: R.108 Chain E: R.108, I.109 Chain F: R.108, I.109 4 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 2 interactions with chain E Salt bridges: F:R.108, D:R.108, E:R.108 Hydrophobic interactions: E:R.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rajasekaran, K. et al., Pae2307 a Phosphotransferase. To be Published

Release Date

2008-08-05

Peptides

HYPOTHETICAL PROTEIN PAE2307: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

HYPOTHETICAL PROTEIN PAE2307