SMTL ID : 2jcd.1

Structure of the N-oxygenase AurF from Streptomyces thioluteus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

homo-dimer

Ligands

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: E.110, E.145, H.148, H.232, E.236 Ligands: MN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.145, A:H.148, A:H.232, A:E.236, H2O.11 MN.2: 5 residues within 4Å: Chain A: E.145, E.205, E.236, H.239 Ligands: MN.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.145, A:E.205, A:E.236, A:H.239, H2O.11 MN.8: 6 residues within 4Å: Chain B: E.110, E.145, H.148, H.232, E.236 Ligands: MN.9 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.110, B:E.145, B:H.148, B:H.232, B:E.236 MN.9: 5 residues within 4Å: Chain B: E.145, E.205, E.236, H.239 Ligands: MN.8 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.145, B:E.205, B:E.236, B:H.239, H2O.17

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: K.53, D.55, I.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.55 Water bridges: A:D.55 EDO.4: 2 residues within 4Å: Chain A: R.260, R.264 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.260, A:R.264 Water bridges: A:R.264, A:R.264 EDO.5: 8 residues within 4Å: Chain A: Y.63, D.69, R.158, T.159, L.162, R.163, Q.222, H.225 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.63, A:R.158, A:R.163, A:R.163 Water bridges: A:T.159 EDO.6: 6 residues within 4Å: Chain A: E.104, R.105, P.172, E.173, L.174 Chain B: A.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.174 Water bridges: A:G.101 EDO.7: 2 residues within 4Å: Chain A: P.127, R.253 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.29, A:E.29, A:R.253 EDO.10: 6 residues within 4Å: Chain A: A.23 Chain B: E.104, R.105, P.172, E.173, L.174 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.174 Water bridges: B:G.101, B:E.173 EDO.11: 6 residues within 4Å: Chain A: M.153, I.156 Chain B: W.21, A.22, W.26, R.135 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.135 Water bridges: B:G.25, B:R.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zocher, G.E. et al., Structure and Action of the N-Oxygenase Aurf from Streptomyces Thioluteus. J.Mol.Biol. (2007)

Release Date

2007-09-11

Peptides

N-OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-OXIDASE