SMTL ID : 2jck.1

Crystal structure of alpha-1,3 Galactosyltransferase (R365K) in complex with UDP and 2 manganese ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 13 residues within 4Å: Chain A: F.55, A.56, V.57, Y.60, W.116, I.119, S.120, R.123, D.146, V.147, D.148, E.281 Ligands: MN.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.116, A:I.119 Hydrogen bonds: A:F.55, A:F.55, A:V.57, A:V.57, A:Y.60, A:V.147, A:D.148 Water bridges: A:R.123, A:R.123 pi-Stacking: A:Y.60

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: D.146, D.148 Ligands: UDP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.146, A:D.148, A:D.148, H2O.16 MN.3: 3 residues within 4Å: Chain A: Q.168, H.201, E.238 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.238, H2O.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jamaluddin, H. et al., Conformational Changes Induced by Binding Udp-2F-Galactose to Alpha-1,3 Galactosyltransferase-Implications for Catalysis. J.Mol.Biol. (2007)

Release Date

2007-05-22

Peptides

N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE

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