SMTL ID : 2jcm.1

Crystal structure of Human Cytosolic 5'-Nucleotidase II in complex with beryllium trifluoride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 1 residues within 4Å: Chain A: R.382 No protein-ligand interaction detected (PLIP) UNX.5: 1 residues within 4Å: Chain B: R.382 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.71, D.73, D.370 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.73, A:D.370, H2O.9, H2O.9 MG.6: 3 residues within 4Å: Chain B: D.71, D.73, D.370 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.73, B:D.370, H2O.19, H2O.19

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: R.163, L.377, Q.472, R.475, Y.476 Chain B: R.475 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.472 Salt bridges: A:R.163, A:R.475, B:R.475 Water bridges: B:R.475 SO4.4: 4 residues within 4Å: Chain A: G.149, P.150, R.153, K.159 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.153, A:K.159 SO4.7: 6 residues within 4Å: Chain A: R.475 Chain B: R.163, L.377, Q.472, R.475, Y.476 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Water bridges: A:R.475 Salt bridges: A:R.475, B:R.163, B:R.475 Hydrogen bonds: B:Q.472, B:Y.476 SO4.8: 4 residues within 4Å: Chain B: G.149, P.150, R.153, K.159 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.153, B:K.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallden, K. et al., Crystal Structure of Human Cytosolic 5'- Nucleotidase II: Insights Into Allosteric Regulation and Substrate Recognition. J.Biol.Chem. (2007)

Release Date

2007-01-30

Peptides

CYTOSOLIC PURINE 5'-NUCLEOTIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CYTOSOLIC PURINE 5'-NUCLEOTIDASE

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