SMTL ID : 2jcr.1

The hyaluronan binding domain of murine CD44 in a Type B complex with an HA 8-mer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- BDP- NAG- BDP- NAG- BDP- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-beta-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-BDP-NAG-BDP-NAG-BDP-NAG.1: 15 residues within 4Å: Chain A: R.23, Y.24, C.59, R.60, Y.61, I.70, N.76, A.77, I.78, C.79, A.80, A.81, H.83, Y.87, R.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.133 Water bridges: A:R.133

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: V.8, T.9, C.10, R.11, C.112, T.113, S.114, V.115, N.132, R.133, D.134 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.11, A:T.113, A:V.115, A:R.133, A:D.134, A:D.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banerji, S. et al., Structures of the Cd44-Hyaluronan Complex Provide Insight Into a Fundamental Carbohydrate-Protein Interaction. Nat.Struct.Mol.Biol. (2008)

Release Date

2007-01-30

Peptides

CD44 ANTIGEN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD44 ANTIGEN

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