SMTL ID : 2jd2.1

X-ray structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase, DXR, Rv2870c, from Mycobacterium tuberculosis, in complex with manganese

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 5 residues within 4Å: Chain A: D.160, S.161, E.162, N.227, E.231 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.160, A:E.162, A:E.231, H2O.7, H2O.7 MN.4: 3 residues within 4Å: Chain B: D.160, E.162, E.231 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.160, B:E.162, B:E.231, H2O.15, H2O.15, H2O.15

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: E.162, A.185, S.186, H.209, S.222, N.227, K.228 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.186, A:S.222, A:N.227 Water bridges: A:E.162, A:G.187, A:G.187, A:K.228 Salt bridges: A:H.209, A:K.228 SO4.3: 3 residues within 4Å: Chain A: R.171, W.286, P.287 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.171 SO4.5: 6 residues within 4Å: Chain B: E.162, A.185, S.186, S.222, N.227, K.228 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.186, B:N.227 Water bridges: B:G.187, B:G.187, B:S.222, B:K.228, B:K.228, B:K.228 Salt bridges: B:K.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Henriksson, L.M. et al., Structures of Mycobacterium Tuberculosis 1-Deoxy-D- Xylulose-5-Phosphate Reductoisomerase Provide New Insights Into Catalysis. J.Biol.Chem. (2007)

Release Date

2007-05-08

Peptides

1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE

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