SMTL ID : 2jd5.1

Sky1p bound to Npl3p-derived substrate peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x ARG- GLU- ARG- SER- PRO: NUCLEOLAR PROTEIN 3(Non-covalent)

ARG-GLU-ARG-SER-PRO.1: 12 residues within 4Å: Chain A: K.286, K.288 Chain B: L.234, D.238, D.248, Q.252, E.255, L.256, K.288, W.290, V.295, K.299 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:K.286, B:W.290 Hydrogen bonds: A:K.286, A:K.288, B:L.234, B:L.234 Salt bridges: A:K.288, B:K.288 Water bridges: B:E.255

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: N.162, D.181 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.181, H2O.1 MG.5: 1 residues within 4Å: Chain B: D.181 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.181

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: Y.16, K.17, D.18, F.95, N.96, H.97, K.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.17, A:D.18, A:K.98 Water bridges: A:K.98 Salt bridges: A:H.97, A:K.98 SO4.4: 8 residues within 4Å: Chain B: P.15, Y.16, K.17, D.18, F.95, N.96, H.97, K.98 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.17, B:D.18, B:N.96, B:K.98 Water bridges: B:P.15, B:Y.16, B:K.98, B:K.98 Salt bridges: B:H.97, B:K.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lukasiewicz, R. et al., The Rgg Domain of Npl3P Recruits Sky1P Through Docking Interactions. J.Mol.Biol. (2007)

Release Date

2007-02-06

Peptides

SERINE/THREONINE-PROTEIN KINASE SKY1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SERINE/THREONINE-PROTEIN KINASE SKY1

Related Entries With Identical Sequence