SMTL ID : 2jd6.1 (1 other biounit)

Crystal Structure of the as isolated Ferritin from the Hyperthermophilic Archaeal Anaerobe Pyrococcus furiosus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

homo-24-mer

Ligands

24 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: E.17, E.50, H.53, Q.127 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.17, A:E.50, A:H.53, H2O.1 FE.2: 4 residues within 4Å: Chain B: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.17, B:E.50, B:H.53 FE.5: 4 residues within 4Å: Chain C: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.17, C:E.50, C:H.53 FE.8: 4 residues within 4Å: Chain D: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.17, D:E.50, D:H.53 FE.11: 4 residues within 4Å: Chain E: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.17, E:E.50, E:H.53 FE.13: 4 residues within 4Å: Chain F: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.17, F:E.50, F:H.53 FE.15: 4 residues within 4Å: Chain G: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.17, G:E.50, G:H.53 FE.17: 4 residues within 4Å: Chain H: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.17, H:E.50, H:H.53 FE.19: 3 residues within 4Å: Chain I: E.17, E.50, H.53 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.17, I:E.50, I:H.53 FE.21: 4 residues within 4Å: Chain J: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.17, J:E.50, J:H.53 FE.22: 4 residues within 4Å: Chain K: E.17, E.50, H.53, Q.127 4 PLIP interactions: 3 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:E.17, K:E.50, K:H.53, H2O.8 FE.25: 4 residues within 4Å: Chain L: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.17, L:E.50, L:H.53 FE.27: 4 residues within 4Å: Chain M: E.17, E.50, H.53, Q.127 4 PLIP interactions: 3 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:E.17, M:E.50, M:H.53, H2O.10 FE.29: 3 residues within 4Å: Chain N: E.17, E.50, H.53 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:E.17, N:E.50, N:H.53 FE.33: 4 residues within 4Å: Chain O: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:E.17, O:E.50, O:H.53 FE.35: 4 residues within 4Å: Chain P: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain P Metal complexes: P:E.17, P:E.50, P:H.53 FE.36: 4 residues within 4Å: Chain Q: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain Q Metal complexes: Q:E.17, Q:E.50, Q:H.53 FE.38: 4 residues within 4Å: Chain R: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.17, R:E.50, R:H.53 FE.39: 4 residues within 4Å: Chain S: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:E.17, S:E.50, S:H.53 FE.41: 4 residues within 4Å: Chain T: E.17, E.50, H.53, Q.127 4 PLIP interactions: 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:E.17, T:E.50, T:H.53, H2O.16 FE.42: 4 residues within 4Å: Chain U: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.17, U:E.50, U:H.53 FE.44: 4 residues within 4Å: Chain V: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain V Metal complexes: V:E.17, V:E.50, V:H.53 FE.46: 4 residues within 4Å: Chain W: E.17, E.50, H.53, Q.127 4 PLIP interactions: 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.17, W:E.50, W:H.53, H2O.18 FE.47: 4 residues within 4Å: Chain X: E.17, E.50, H.53, Q.127 3 PLIP interactions: 3 interactions with chain X Metal complexes: X:E.17, X:E.50, X:H.53

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain B: N.65 Chain F: K.135 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain B: R.16, F.96 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain C: N.65 Chain D: K.135 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain C: R.16, F.96 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain D: N.65 Chain W: K.135 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain D: R.16, F.96 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain E: N.65 Chain I: K.135 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain F: R.16, F.96 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain G: R.16, F.96 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain A: N.65 Chain H: K.135 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain I: N.65 Chain J: K.135 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain K: K.135, K.142 Chain M: N.65 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain K: R.16, F.96 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain L: K.135, K.142 Chain O: N.65 Ligand excluded by PLIP SO4.28: 6 residues within 4Å: Chain M: S.98, K.99, Y.102, E.131 Chain N: M.1, R.64 Ligand excluded by PLIP SO4.30: 2 residues within 4Å: Chain M: K.135 Chain N: N.65 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain K: N.65 Chain N: K.135, D.139, K.142 Ligand excluded by PLIP SO4.32: 2 residues within 4Å: Chain N: R.5, E.110 Ligand excluded by PLIP SO4.34: 2 residues within 4Å: Chain O: K.135 Chain V: N.65 Ligand excluded by PLIP SO4.37: 3 residues within 4Å: Chain Q: S.3, E.4, R.5 Ligand excluded by PLIP SO4.40: 3 residues within 4Å: Chain S: K.135, K.142 Chain T: N.65 Ligand excluded by PLIP SO4.43: 2 residues within 4Å: Chain P: N.65 Chain U: K.135 Ligand excluded by PLIP SO4.45: 3 residues within 4Å: Chain L: N.65 Chain V: K.135, D.139 Ligand excluded by PLIP SO4.48: 3 residues within 4Å: Chain H: N.65 Chain X: K.135, K.142 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tatur, J. et al., Crystal Structure of the Ferritin from the Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus. J.Biol.Inorg.Chem. (2007)

Release Date

2007-02-27

Peptides

FERRITIN HOMOLOG: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
0

B
1

C
2

D
3

E
4

F
5

G
6

H
7

I
8

J
9

K
G

L
H

M
I

N
J

O
K

P
L

Q
M

R
N

S
O

T
P

U
Q

V
R

W
Y

X
Z

FERRITIN HOMOLOG

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