- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 8 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: E.10, D.12, D.21, H.26
6 PLIP interactions:4 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.10, A:D.12, A:D.21, A:H.26, H2O.9, H2O.9
MN.4: 1 residues within 4Å:- Chain A: H.53
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:H.53, H2O.7, H2O.9, H2O.9, H2O.9
MN.6: 4 residues within 4Å:- Chain B: E.10, D.12, D.21, H.26
6 PLIP interactions:4 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:E.10, B:D.12, B:D.21, B:H.26, H2O.16, H2O.16
MN.8: 1 residues within 4Å:- Chain B: H.53
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:H.53, H2O.16
MN.10: 4 residues within 4Å:- Chain C: E.10, D.12, D.21, H.26
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:E.10, C:D.12, C:D.21, C:H.26, H2O.22, H2O.22
MN.12: 4 residues within 4Å:- Chain B: K.118, S.192
- Chain C: H.53, D.194
2 PLIP interactions:1 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:H.53, H2O.22
MN.14: 4 residues within 4Å:- Chain D: E.10, D.12, D.21, H.26
6 PLIP interactions:4 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:E.10, D:D.12, D:D.21, D:H.26, H2O.29, H2O.29
MN.16: 2 residues within 4Å:- Chain D: H.53, D.194
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:H.53, H2O.7, H2O.29
- 4 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
XMM.3: 9 residues within 4Å:- Chain A: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:L.101
- Hydrogen bonds: A:Y.14, A:Y.14, A:N.16, A:L.101, A:Y.102, A:Y.102, A:R.230
- Water bridges: A:R.230
XMM.7: 9 residues within 4Å:- Chain B: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:Y.14, B:Y.14, B:N.16, B:G.100, B:L.101, B:Y.102, B:Y.102, B:R.230
- Water bridges: B:Y.102, B:R.230
XMM.11: 9 residues within 4Å:- Chain C: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:N.16, C:L.101, C:Y.102, C:Y.102, C:R.230
- Water bridges: C:R.230
XMM.15: 9 residues within 4Å:- Chain D: Y.14, N.16, G.100, L.101, Y.102, A.209, D.210, G.229, R.230
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:L.101
- Hydrogen bonds: D:Y.14, D:N.16, D:G.100, D:L.101, D:Y.102, D:Y.102, D:R.230
- Water bridges: D:Y.102, D:R.230
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagano, C.S. et al., Insights Into the Structural Basis of the Ph- Dependent Dimer-Tetramer Equilibrium Through Crystallographic Analysis of Recombinant Diocleinae Lectins. Biochem.J. (2008)
- Release Date
- 2007-10-30
- Peptides
- LECTIN ALPHA CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 8 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x XMM: 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nagano, C.S. et al., Insights Into the Structural Basis of the Ph- Dependent Dimer-Tetramer Equilibrium Through Crystallographic Analysis of Recombinant Diocleinae Lectins. Biochem.J. (2008)
- Release Date
- 2007-10-30
- Peptides
- LECTIN ALPHA CHAIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D