SMTL ID : 2jf3.1

Nucleotide substrate binding by UDP-N-acetylglucosamine acyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

3 x UD1: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE(Non-covalent)

UD1.1: 16 residues within 4Å: Chain A: Q.73, D.74, L.75, K.76, H.125, G.143, H.144, Q.161, F.162 Chain B: I.152, M.170, N.198, E.200, G.201, R.204, R.205 13 PLIP interactions: 8 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.74, A:L.75, A:K.76, A:H.125, A:G.143, A:Q.161, B:N.198, B:N.198, B:G.201, B:R.205 Salt bridges: A:K.76, A:K.76, B:R.204 UD1.2: 16 residues within 4Å: Chain B: Q.73, D.74, L.75, K.76, H.125, G.143, H.144, Q.161, F.162 Chain C: I.152, M.170, N.198, E.200, G.201, R.204, R.205 13 PLIP interactions: 8 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:D.74, B:L.75, B:K.76, B:H.125, B:G.143, B:Q.161, C:N.198, C:N.198, C:G.201, C:R.205 Salt bridges: B:K.76, B:K.76, C:R.204 UD1.3: 16 residues within 4Å: Chain A: I.152, M.170, N.198, E.200, G.201, R.204, R.205 Chain C: Q.73, D.74, L.75, K.76, H.125, G.143, H.144, Q.161, F.162 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain A Hydrogen bonds: C:L.75, C:K.76, C:H.125, C:G.143, C:Q.161, A:N.198, A:N.198, A:G.201, A:R.205 Salt bridges: C:K.76, C:K.76, A:R.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ulaganathan, V. et al., Nucleotide Substrate Recognition by Udp-N-Acetylglucosamine Acyltransferase (Lpxa) in the First Step of Lipid a Biosynthesis. J.Mol.Biol. (2007)

Release Date

2007-04-24

Peptides

ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE

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