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SMTL ID : 2jf3.1
Nucleotide substrate binding by UDP-N-acetylglucosamine acyltransferase
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 3.00 Å
Oligo State
homo-trimer
Ligands
3 x
UD1
:
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
(Non-covalent)
UD1.1:
16 residues within 4Å:
Chain A:
Q.73
,
D.74
,
L.75
,
K.76
,
H.125
,
G.143
,
H.144
,
Q.161
,
F.162
Chain B:
I.152
,
M.170
,
N.198
,
E.200
,
G.201
,
R.204
,
R.205
13
PLIP interactions
:
8 interactions with chain A
,
5 interactions with chain B
Hydrogen bonds:
A:D.74
,
A:L.75
,
A:K.76
,
A:H.125
,
A:G.143
,
A:Q.161
,
B:N.198
,
B:N.198
,
B:G.201
,
B:R.205
Salt bridges:
A:K.76
,
A:K.76
,
B:R.204
UD1.2:
16 residues within 4Å:
Chain B:
Q.73
,
D.74
,
L.75
,
K.76
,
H.125
,
G.143
,
H.144
,
Q.161
,
F.162
Chain C:
I.152
,
M.170
,
N.198
,
E.200
,
G.201
,
R.204
,
R.205
13
PLIP interactions
:
8 interactions with chain B
,
5 interactions with chain C
Hydrogen bonds:
B:D.74
,
B:L.75
,
B:K.76
,
B:H.125
,
B:G.143
,
B:Q.161
,
C:N.198
,
C:N.198
,
C:G.201
,
C:R.205
Salt bridges:
B:K.76
,
B:K.76
,
C:R.204
UD1.3:
16 residues within 4Å:
Chain A:
I.152
,
M.170
,
N.198
,
E.200
,
G.201
,
R.204
,
R.205
Chain C:
Q.73
,
D.74
,
L.75
,
K.76
,
H.125
,
G.143
,
H.144
,
Q.161
,
F.162
12
PLIP interactions
:
7 interactions with chain C
,
5 interactions with chain A
Hydrogen bonds:
C:L.75
,
C:K.76
,
C:H.125
,
C:G.143
,
C:Q.161
,
A:N.198
,
A:N.198
,
A:G.201
,
A:R.205
Salt bridges:
C:K.76
,
C:K.76
,
A:R.204
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Ulaganathan, V. et al., Nucleotide Substrate Recognition by Udp-N-Acetylglucosamine Acyltransferase (Lpxa) in the First Step of Lipid a Biosynthesis. J.Mol.Biol. (2007)
Release Date
2007-04-24
Peptides
ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE:
A
B
C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
C
A
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ACYL-[ACYL-CARRIER-PROTEIN]--UDP-N-ACETYLGLUCOSAMINE O-ACYLTRANSFERASE
Toggle Identical (ABC)
Related Entries With Identical Sequence
1lxa.1
|
2aq9.1
|
2qia.1
|
2qiv.1
|
4j09.1
|
6hy2.1
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