SMTL ID : 2jf6.1

Structure of inactive mutant of Strictosidine Glucosidase in complex with strictosidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

homo-octamer

Ligands

8 x S55: METHYL (2S,3R,4S)-3-ETHYL-2-(BETA-D-GLUCOPYRANOSYLOXY)-4-[(1S)-2,3,4,9-TETRAHYDRO-1H-BETA-CARBOLIN-1-YLMETHYL]-3,4-DIHYDRO-2H-PYRAN-5-CARBOXYLATE(Non-covalent)

S55.1: 17 residues within 4Å: Chain A: Q.57, H.161, N.206, E.207, T.210, F.221, N.273, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:T.210, A:F.221, A:W.388, A:W.388, A:W.388, A:W.388, A:W.388 Hydrogen bonds: A:Q.57, A:Q.57, A:N.206, A:E.207, A:N.343, A:Y.345, A:E.472, A:Y.481, A:Y.481, A:Y.481 S55.2: 19 residues within 4Å: Chain B: Q.57, H.161, W.162, N.206, E.207, T.210, F.221, N.273, M.275, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:W.162, B:T.210, B:F.221, B:W.388, B:W.388, B:W.388, B:W.388 Hydrogen bonds: B:Q.57, B:Q.57, B:N.206, B:E.207, B:N.343, B:E.472, B:Y.481 Water bridges: B:Y.481 S55.3: 17 residues within 4Å: Chain C: Q.57, H.161, N.206, E.207, T.210, F.221, N.273, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:T.210, C:F.221, C:W.388, C:W.388, C:W.388, C:W.388, C:W.388 Hydrogen bonds: C:Q.57, C:Q.57, C:N.206, C:E.207, C:N.343, C:Y.345, C:E.472, C:Y.481, C:Y.481, C:Y.481 S55.4: 19 residues within 4Å: Chain D: Q.57, H.161, W.162, N.206, E.207, T.210, F.221, N.273, M.275, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:W.162, D:T.210, D:F.221, D:W.388, D:W.388, D:W.388, D:W.388 Hydrogen bonds: D:Q.57, D:Q.57, D:N.206, D:E.207, D:N.343, D:E.472, D:Y.481 Water bridges: D:Y.481 S55.5: 17 residues within 4Å: Chain E: Q.57, H.161, N.206, E.207, T.210, F.221, N.273, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 17 PLIP interactions: 17 interactions with chain E Hydrophobic interactions: E:T.210, E:F.221, E:W.388, E:W.388, E:W.388, E:W.388, E:W.388 Hydrogen bonds: E:Q.57, E:Q.57, E:N.206, E:E.207, E:N.343, E:Y.345, E:E.472, E:Y.481, E:Y.481, E:Y.481 S55.6: 19 residues within 4Å: Chain F: Q.57, H.161, W.162, N.206, E.207, T.210, F.221, N.273, M.275, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 15 PLIP interactions: 15 interactions with chain F Hydrophobic interactions: F:W.162, F:T.210, F:F.221, F:W.388, F:W.388, F:W.388, F:W.388 Hydrogen bonds: F:Q.57, F:Q.57, F:N.206, F:E.207, F:N.343, F:E.472, F:Y.481 Water bridges: F:Y.481 S55.7: 17 residues within 4Å: Chain G: Q.57, H.161, N.206, E.207, T.210, F.221, N.273, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 17 PLIP interactions: 17 interactions with chain G Hydrophobic interactions: G:T.210, G:F.221, G:W.388, G:W.388, G:W.388, G:W.388, G:W.388 Hydrogen bonds: G:Q.57, G:Q.57, G:N.206, G:E.207, G:N.343, G:Y.345, G:E.472, G:Y.481, G:Y.481, G:Y.481 S55.8: 19 residues within 4Å: Chain H: Q.57, H.161, W.162, N.206, E.207, T.210, F.221, N.273, M.275, M.297, N.343, Y.345, G.386, W.388, E.416, W.465, E.472, W.473, Y.481 15 PLIP interactions: 15 interactions with chain H Hydrophobic interactions: H:W.162, H:T.210, H:F.221, H:W.388, H:W.388, H:W.388, H:W.388 Hydrogen bonds: H:Q.57, H:Q.57, H:N.206, H:E.207, H:N.343, H:E.472, H:Y.481 Water bridges: H:Y.481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barleben, L. et al., Molecular Architecture of Strictosidine Glucosidase - the Gateway to the Biosynthesis of the Monoterpenoid Indole Alkaloid Family. Plant Cell (2007)

Release Date

2008-02-05

Peptides

STRICTOSIDINE-O-BETA-D-GLUCOSIDASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

STRICTOSIDINE-O-BETA-D-GLUCOSIDASE

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