SMTL ID : 2jfb.1 (2 other biounits)

3D Structure of Lumazine Synthase from Candida albicans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-pentamer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: G.94, S.95, T.96, H.98 Chain B: R.137 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.95, A:T.96, A:T.96, A:T.96 Water bridges: A:G.94, A:F.99 Salt bridges: B:R.137 PO4.2: 4 residues within 4Å: Chain B: G.94, S.95, T.96 Chain C: R.137 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:S.95, B:T.96, B:T.96, B:T.96 Water bridges: B:G.94, B:G.94, B:T.96 Salt bridges: C:R.137 PO4.3: 4 residues within 4Å: Chain C: G.94, S.95, T.96 Chain D: R.137 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain C Salt bridges: D:R.137 Hydrogen bonds: C:S.95, C:T.96 Water bridges: C:T.96, C:H.98 PO4.4: 5 residues within 4Å: Chain D: G.94, S.95, T.96, H.98 Chain E: R.137 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:S.95, D:S.95, D:T.96 Water bridges: D:G.94, D:T.96 Salt bridges: E:R.137 PO4.6: 5 residues within 4Å: Chain A: R.137 Chain E: G.94, S.95, T.96, H.98 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:S.95, E:S.95, E:T.96 Water bridges: E:G.94, E:G.94 Salt bridges: A:R.137

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 5 residues within 4Å: Chain A: K.112 Chain B: K.112 Chain C: K.112 Chain D: K.112 Chain E: K.112 6 PLIP interactions: 1 interactions with chain E, 2 interactions with chain D, 2 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: E:K.112 Hydrogen bonds: D:K.112, B:K.112, B:K.112, C:K.112 Water bridges: D:K.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morgunova, E. et al., Lumazine Synthase from Candida Albicans as an Anti- Fungal Target Enzyme: Structural and Biochemical Basis for Drug Design. J.Biol.Chem. (2007)

Release Date

2007-05-01

Peptides

6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE

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