SMTL ID : 2jg1.2 (1 other biounit)

STRUCTURE OF Staphylococcus aureus D-TAGATOSE-6-PHOSPHATE KINASE with cofactor and substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: K.58, D.183, K.203, E.208 Ligands: ANP.2 No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Ligands: ANP.6 No protein-ligand interaction detected (PLIP) MG.4: 4 residues within 4Å: Chain B: K.58, D.183, K.203 Ligands: ANP.6 No protein-ligand interaction detected (PLIP)

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 23 residues within 4Å: Chain A: K.58, K.203, N.205, S.242, L.243, G.244, A.245, G.247, I.261, I.264, V.266, P.269, V.270, G.271, S.272, G.273, D.274, T.276, N.298, G.301, M.302, A.305 Ligands: MG.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:K.58, A:K.203, A:N.205, A:S.242, A:L.243, A:G.244, A:G.271, A:G.273, A:D.274, A:D.274, A:T.276, A:N.298 Water bridges: A:K.58, A:D.183, A:D.183, A:K.203, A:E.208, A:D.274 Salt bridges: A:K.203 ANP.6: 24 residues within 4Å: Chain B: K.58, K.203, N.205, S.242, L.243, G.244, A.245, G.247, I.261, I.264, V.266, P.269, V.270, G.271, S.272, G.273, D.274, T.276, N.298, G.301, M.302 Ligands: MG.3, MG.4, TA6.5 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:K.58, B:K.203, B:N.205, B:S.242, B:L.243, B:G.244, B:P.269, B:G.271, B:S.272, B:G.273, B:D.274, B:D.274, B:T.276, B:N.298 Water bridges: B:Q.119, B:Q.119, B:Q.119, B:Q.119, B:N.205, B:I.206, B:I.264 Salt bridges: B:K.203

1 x TA6: 6-O-phosphono-beta-D-tagatofuranose(Non-covalent)

TA6.5: 15 residues within 4Å: Chain A: R.47 Chain B: D.32, G.57, K.58, N.61, R.108, C.110, E.121, L.123, G.155, S.156, V.270, G.271, D.274 Ligands: ANP.6 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.32, B:D.32, B:G.57, B:K.58, B:N.61, B:S.156, B:S.156, B:G.271 Water bridges: B:N.28, B:R.108, B:E.121, A:R.47, A:R.47 Salt bridges: B:K.58, B:R.108, A:R.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miallau, L. et al., Structures of Staphylococcus Aureus D-Tagatose-6-Phosphate Kinase Implicate Domain Motions in Specificity and Mechanism. J.Biol.Chem. (2007)

Release Date

2007-04-24

Peptides

TAGATOSE-6-PHOSPHATE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

TAGATOSE-6-PHOSPHATE KINASE

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