SMTL ID : 2jg7.1 (1 other biounit)

Crystal structure of Seabream Antiquitin and Elucidation of its substrate specificity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 28 residues within 4Å: Chain A: I.162, T.163, A.164, F.165, N.166, K.189, G.190, A.191, P.192, A.226, G.229, T.230, F.243, T.244, G.245, S.246, V.249, M.252, V.253, E.267, L.268, G.269, G.270, C.301, E.398, F.400, F.467, E.478 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.244 Hydrogen bonds: A:T.163, A:F.165, A:K.189, A:T.230, A:T.230, A:S.246, A:E.267, A:L.268, A:G.270, A:E.398 NAD.2: 28 residues within 4Å: Chain B: I.162, T.163, A.164, F.165, N.166, K.189, G.190, A.191, P.192, A.226, G.229, T.230, F.243, T.244, G.245, S.246, V.249, M.252, V.253, E.267, L.268, G.269, G.270, C.301, E.398, F.400, F.467, E.478 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.244 Hydrogen bonds: B:T.163, B:F.165, B:K.189, B:T.230, B:T.230, B:S.246, B:L.268, B:G.270, B:E.398 Water bridges: B:R.305 NAD.3: 28 residues within 4Å: Chain C: I.162, T.163, A.164, F.165, N.166, K.189, G.190, A.191, P.192, A.226, G.229, T.230, F.243, T.244, G.245, S.246, V.249, M.252, V.253, E.267, L.268, G.269, G.270, C.301, E.398, F.400, F.467, E.478 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:T.244 Hydrogen bonds: C:T.163, C:F.165, C:K.189, C:T.230, C:S.246, C:L.268, C:G.270, C:E.398 NAD.4: 28 residues within 4Å: Chain D: I.162, T.163, A.164, F.165, N.166, K.189, G.190, A.191, P.192, A.226, G.229, T.230, F.243, T.244, G.245, S.246, V.249, M.252, V.253, E.267, L.268, G.269, G.270, C.301, E.398, F.400, F.467, E.478 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:T.244 Hydrogen bonds: D:T.163, D:F.165, D:K.189, D:T.230, D:S.246, D:E.267, D:L.268, D:G.270, D:E.398

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, W.K. et al., The Crystal Structure of Seabream Antiquitin Reveals the Structural Basis of its Substrate Specificity. FEBS Lett. (2008)

Release Date

2008-05-13

Peptides

ANTIQUITIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ANTIQUITIN

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