SMTL ID : 2jgp.1

Structure of the TycC5-6 PCP-C bidomain of the tyrocidine synthetase TycC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: H.222, D.226, G.227, V.372 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.227 Water bridges: A:D.226, A:V.228 Salt bridges: A:H.222 SO4.2: 6 residues within 4Å: Chain A: G.38, G.39, H.40, S.41, L.42, R.43 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.40, A:L.42, A:R.43 Water bridges: A:R.43 Salt bridges: A:H.40, A:R.43

2 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.3: 6 residues within 4Å: Chain A: S.123, F.140, T.218, M.220, L.233, L.234 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.218 DIO.4: 1 residues within 4Å: Chain A: V.156 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 4 residues within 4Å: Chain A: Q.17, Q.396, L.399, D.400 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.400 Water bridges: A:Q.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samel, S.A. et al., Structural and Functional Insights Into a Peptide Bond-Forming Bidomain from a Nonribosomal Peptide Synthetase. Structure (2007)

Release Date

2007-10-30

Peptides

TYROCIDINE SYNTHETASE 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TYROCIDINE SYNTHETASE 3