SMTL ID : 2jha.1

The structure of bluetongue virus VP4 reveals a multifunctional RNA- capping production-line

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

monomer

Ligands

1 x GP3: DIGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GP3.1: 13 residues within 4Å: Chain A: K.178, S.267, S.268, D.269, E.279, R.282, K.306, I.309, N.311, M.333, Y.334, E.335, R.367 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.178, A:K.178, A:S.267, A:S.267, A:R.282, A:R.282, A:K.306, A:I.309, A:Y.334 Salt bridges: A:D.269, A:R.282, A:R.282

2 x GUN: GUANINE(Non-covalent)

GUN.2: 5 residues within 4Å: Chain A: N.141, D.184, Y.185, K.383, F.387 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.141, A:D.184 pi-Cation interactions: A:F.387 GUN.3: 7 residues within 4Å: Chain A: R.114, K.115, F.117, G.118, R.122, Y.446, W.495 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.114, A:G.118, A:R.122, A:R.122, A:W.495 pi-Stacking: A:F.410 pi-Cation interactions: A:F.410

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sutton, G. et al., Bluetongue Virus Vp4 is an RNA-Capping Assembly Line. Nat.Struct.Mol.Biol. (2007)

Release Date

2007-04-10

Peptides

VP4 CORE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VP4 CORE PROTEIN

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