SMTL ID : 2jhn.1 (1 other biounit)

3-METHYLADENINE DNA-GLYCOSYLASE FROM ARCHAEOGLOBUS FULGIDUS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MBO: MERCURIBENZOIC ACID(Non-covalent)

MBO.1: 3 residues within 4Å: Chain A: K.142, R.146, C.178 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.142 Salt bridges: A:K.142 Metal complexes: A:C.178

1 x HG: MERCURY (II) ION(Non-covalent)

HG.2: 2 residues within 4Å: Chain A: M.1, W.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:M.1

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: T.213, F.215, I.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.213, A:G.217, A:I.218 NA.4: 5 residues within 4Å: Chain A: L.21, P.22, L.24, T.26, D.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.26, A:T.26 Water bridges: A:L.21

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: K.15, F.18, F.19, Y.79, L.80, F.108, G.112, L.113, M.114 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.15, A:L.80, A:G.112, A:L.113 GOL.7: 6 residues within 4Å: Chain A: N.234, V.235, F.236, A.266, G.271, A.274 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.234, A:F.236 Water bridges: A:R.267

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 6 residues within 4Å: Chain A: E.190, E.194, Y.211, S.214, F.215, K.216 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.214, A:S.214, A:K.216 Water bridges: A:E.190 Salt bridges: A:E.194, A:K.216 pi-Cation interactions: A:F.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leiros, I. et al., Structural Basis for Enzymatic Excision of N1-Methyladenine and N3-Methylcytosine from DNA. Embo J. (2007)

Release Date

2007-04-10

Peptides

3-METHYLADENINE DNA-GLYCOSYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-METHYLADENINE DNA-GLYCOSYLASE

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