SMTL ID : 2jid.1

Human Dipeptidyl peptidase IV in complex with 1-(3,4-Dimethoxy-phenyl) -3-m-tolyl-piperidine-4-ylamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: Y.88, R.117, N.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.120, A:N.120 NAG.2: 4 residues within 4Å: Chain A: V.48, N.55, S.56, S.57 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.48 Hydrogen bonds: A:N.55 NAG.3: 2 residues within 4Å: Chain A: W.157, N.251 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.251 NAG.4: 5 residues within 4Å: Chain A: I.164, N.199, T.201, E.202, K.237 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.199, A:E.202 NAG.6: 3 residues within 4Å: Chain B: H.70, P.119, N.120 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.70, B:N.89, B:N.120 NAG.7: 4 residues within 4Å: Chain B: V.48, N.55, S.56, S.57 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.55, B:S.57 NAG.8: 4 residues within 4Å: Chain B: I.164, N.199, T.201, E.202 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.164 Hydrogen bonds: B:N.199, B:T.201, B:E.202, B:E.202 NAG.9: 4 residues within 4Å: Chain B: E.43, N.44, N.45, N.62 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.62 Hydrogen bonds: B:E.43, B:N.45, B:N.62

2 x GVB: (3R,4S)-1-(3,4-DIMETHOXYPHENYL)-3-(3-METHYLPHENYL)PIPERIDIN-4-AMINE(Non-covalent)

GVB.5: 12 residues within 4Å: Chain A: R.95, E.175, E.176, Y.517, S.600, Y.601, V.626, Y.632, Y.636, N.680, V.681, H.710 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.601, A:V.626, A:Y.632, A:Y.636, A:Y.636, A:Y.636, A:V.681 Hydrogen bonds: A:R.95, A:E.175, A:E.176, A:Y.632 pi-Cation interactions: A:R.95 GVB.10: 10 residues within 4Å: Chain B: R.95, E.175, E.176, Y.517, S.600, Y.632, Y.636, N.680, V.681, H.710 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.632, B:V.681 Hydrogen bonds: B:E.175 pi-Stacking: B:Y.636 pi-Cation interactions: B:R.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lubbers, T. et al., 1,3-Disubstituted 4-Aminopiperidines as Useful Tools in the Optimization of the 2-Aminobenzo[A]Quinolizine Dipeptidyl Peptidase Iv Inhibitors. Bioorg.Med.Chem.Lett. (2007)

Release Date

2008-05-27

Peptides

DIPEPTIDYL PEPTIDASE 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DIPEPTIDYL PEPTIDASE 4