- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.44 Å
- Oligo State
- monomer
- Ligands
- 1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- 1 x NO2: NITRITE ION(Non-covalent)
- 6 x NO3: NITRATE ION(Non-functional Binders)
NO3.7: 4 residues within 4Å:- Chain A: T.150, W.594, R.596, V.707
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.596, A:R.596
- Water bridges: A:N.321
NO3.8: 5 residues within 4Å:- Chain A: V.145, R.354, L.362, G.366, Y.533
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.354, A:Y.533
- Water bridges: A:D.155
NO3.9: 5 residues within 4Å:- Chain A: G.146, V.149, T.150, V.707
- Ligands: NO3.10
1 PLIP interactions:1 interactions with chain A- Water bridges: A:V.707
NO3.10: 7 residues within 4Å:- Chain A: A.142, G.146, H.361, V.707, S.708
- Ligands: NO3.9, NO3.11
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.138
NO3.11: 5 residues within 4Å:- Chain A: R.138, H.361, V.707, R.709
- Ligands: NO3.10
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.138, A:V.707
- Water bridges: A:S.360, A:H.396
NO3.12: 5 residues within 4Å:- Chain A: T.150, M.254, K.586, V.592, W.594
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.150, A:K.586
- Water bridges: A:N.252
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Najmudin, S. et al., Periplasmic Nitrate Reductase Revisited: A Sulfur Atom Completes the Sixth Coordination of the Catalytic Molybdenum. J.Biol.Inorg.Chem. (2008)
- Release Date
- 2008-03-18
- Peptides
- PERIPLASMIC NITRATE REDUCTASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.44 Å
- Oligo State
- monomer
- Ligands
- 1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 2 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- 1 x NO2: NITRITE ION(Non-covalent)
- 6 x NO3: NITRATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Najmudin, S. et al., Periplasmic Nitrate Reductase Revisited: A Sulfur Atom Completes the Sixth Coordination of the Catalytic Molybdenum. J.Biol.Inorg.Chem. (2008)
- Release Date
- 2008-03-18
- Peptides
- PERIPLASMIC NITRATE REDUCTASE: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A