SMTL ID : 2jjl.1

Structure of avian reovirus sigmaC117-326, P321 crystal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: N.9 Chain B: N.9 Chain C: N.9 Ligands: CL.7, CL.13 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: N.23 Chain B: N.23 Chain C: N.23 Ligands: CL.8, CL.14 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: N.9 Chain B: N.9 Chain C: N.9 Ligands: CL.1, CL.13 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: N.23 Chain B: N.23 Chain C: N.23 Ligands: CL.2, CL.14 Ligand excluded by PLIP CL.13: 5 residues within 4Å: Chain A: N.9 Chain B: N.9 Chain C: N.9 Ligands: CL.1, CL.7 Ligand excluded by PLIP CL.14: 5 residues within 4Å: Chain A: N.23 Chain B: N.23 Chain C: N.23 Ligands: CL.2, CL.8 Ligand excluded by PLIP

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: T.166, D.168, S.169, R.201 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.166, A:D.168, A:S.169 Water bridges: A:N.199, A:R.201 Salt bridges: A:R.201 SO4.9: 4 residues within 4Å: Chain B: T.166, D.168, S.169, R.201 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.166, B:D.168, B:S.169 Water bridges: B:N.199, B:R.201 Salt bridges: B:R.201 SO4.15: 4 residues within 4Å: Chain C: T.166, D.168, S.169, R.201 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.166, C:D.168, C:S.169 Water bridges: C:N.199, C:R.201 Salt bridges: C:R.201

9 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: H.43 Chain B: H.43 Chain C: H.43 Ligands: ZN.10, ZN.16 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: B:H.43, A:H.43, C:H.43, H2O.8, H2O.16 ZN.5: 2 residues within 4Å: Chain A: D.97, T.98 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.97, A:D.97 ZN.6: 1 residues within 4Å: Chain A: D.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.7, A:D.7 ZN.10: 5 residues within 4Å: Chain A: H.43 Chain B: H.43 Chain C: H.43 Ligands: ZN.4, ZN.16 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: B:H.43, A:H.43, C:H.43, H2O.16, H2O.24 ZN.11: 2 residues within 4Å: Chain B: D.97, T.98 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.97, B:D.97 ZN.12: 1 residues within 4Å: Chain B: D.7 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.7, B:D.7 ZN.16: 5 residues within 4Å: Chain A: H.43 Chain B: H.43 Chain C: H.43 Ligands: ZN.4, ZN.10 5 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: C:H.43, A:H.43, B:H.43, H2O.8, H2O.24 ZN.17: 2 residues within 4Å: Chain C: D.97, T.98 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.97, C:D.97 ZN.18: 1 residues within 4Å: Chain C: D.7 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.7, C:D.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guardado-Calvo, P. et al., Crystallographic structure of the alpha-helical triple coiled-coil domain of avian reovirus S1133 fibre. J. Gen. Virol. (2009)

Release Date

2009-01-13

Peptides

SIGMA-C CAPSID PROTEIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

SIGMA-C CAPSID PROTEIN

Related Entries With Identical Sequence