SMTL ID : 2jjo.1

Structure of cytochrome P450 EryK in complex with its natural substrate erD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: I.87, H.88, H.95, R.99, F.106, L.238, A.241, G.242, T.245, T.246, L.249, P.287, M.291, R.293, S.345, F.346, G.347, H.351, C.353, L.354, G.355, A.359 Ligands: EY5.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:F.106, A:L.238, A:A.241, A:L.249, A:P.287, A:F.346, A:L.354, A:L.354, A:A.359 Salt bridges: A:H.95, A:R.99, A:R.293, A:H.351 pi-Stacking: A:F.346 Metal complexes: A:C.353

1 x EY5: Erythromycin D(Non-covalent)

EY5.2: 19 residues within 4Å: Chain A: I.87, H.88, E.89, L.169, I.172, M.174, P.177, I.186, L.190, A.237, L.240, A.241, I.244, T.245, F.288, Q.292, I.392, V.393 Ligands: HEM.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:H.88, A:L.169, A:L.169, A:I.172, A:L.190, A:A.237, A:A.241, A:I.244, A:T.245, A:F.288, A:F.288, A:I.392, A:I.392, A:V.393 Hydrogen bonds: A:E.89, A:E.89, A:Q.292 Water bridges: A:A.241, A:T.245, A:Q.292, A:Q.292 Salt bridges: A:H.88, A:H.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Savino, C. et al., Investigating the Structural Plasticity of a Cytochrome P450: Three-Dimensional Structures of P450 Eryk and Binding to its Physiological Substrate. J.Biol.Chem. (2009)

Release Date

2009-07-14

Peptides

CYTOCHROME P450 113A1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYTOCHROME P450 113A1

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