SMTL ID : 2jll.1

Crystal structure of NCAM2 IgIV-FN3II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: P.117, N.119, Y.152, I.159, E.161 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.117 Hydrogen bonds: A:E.161, A:E.161 Water bridges: A:N.119, A:N.119 NAG.2: 2 residues within 4Å: Chain A: L.139, N.145 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.139 NAG.3: 7 residues within 4Å: Chain A: R.136, D.137, R.172, Y.173, N.174, F.185, E.187 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.172 Hydrogen bonds: A:D.137, A:E.187, A:E.187 Water bridges: A:N.174, A:N.174 NAG.4: 2 residues within 4Å: Chain A: N.9, Y.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.9

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: D.279 Ligands: CA.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.279

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 2 residues within 4Å: Chain A: D.194 Ligands: GOL.5 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.194, H2O.4, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kulahin, N. et al., Structural Model and Trans-Interaction of the Entire Ectodomain of the Olfactory Cell Adhesion Molecule. Structure (2011)

Release Date

2009-11-17

Peptides

NEURAL CELL ADHESION MOLECULE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEURAL CELL ADHESION MOLECULE 2