SMTL ID : 2jlr.1

Dengue virus 4 NS3 helicase in complex with AMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: T.33, D.117, E.118 Ligands: ANP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.33, A:E.118, H2O.12, H2O.12

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 16 residues within 4Å: Chain A: H.27, P.28, G.29, A.30, G.31, K.32, T.33, K.34, E.118, A.149, N.162, N.249, R.251, R.293, R.296 Ligands: MN.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.29, A:A.30, A:G.31, A:K.32, A:K.32, A:K.32, A:T.33, A:K.34, A:K.34, A:N.162, A:N.249, A:R.251, A:Q.289, A:R.293, A:R.293, A:R.296, A:R.296, A:R.296 Water bridges: A:Q.289, A:Q.289 Salt bridges: A:R.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, D. et al., Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein. Embo J. (2008)

Release Date

2008-11-25

Peptides

SERINE PROTEASE SUBUNIT NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE PROTEASE SUBUNIT NS3