SMTL ID : 2jls.1

Dengue virus 4 NS3 helicase in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: T.33, D.117, E.118 Ligands: ADP.2 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.33, A:E.118, H2O.10, H2O.10, H2O.10

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: H.27, P.28, G.29, A.30, G.31, K.32, T.33, K.34, N.162, R.251, R.296 Ligands: MN.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.29, A:G.29, A:A.30, A:G.31, A:K.32, A:T.33, A:K.34, A:N.162, A:R.251, A:R.296 Water bridges: A:K.32, A:K.32, A:R.296, A:R.296 Salt bridges: A:K.32, A:R.296

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 6 residues within 4Å: Chain A: T.99, T.100, L.103, C.125, L.327, M.370 1 PLIP interactions: 1 interactions with chain A Water bridges: A:M.370 BME.4: 3 residues within 4Å: Chain A: R.58, Y.75, C.94 3 PLIP interactions: 3 interactions with chain A Water bridges: A:P.56, A:R.58, A:A.96

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: S.219, R.220, T.241 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: P.151, P.152, G.153, S.154, A.285, D.315, K.348 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.153, A:S.154, A:S.154, A:D.315, A:K.348

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, D. et al., Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein. Embo J. (2008)

Release Date

2008-11-25

Peptides

SERINE PROTEASE SUBUNIT NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SERINE PROTEASE SUBUNIT NS3