SMTL ID : 2jlz.2 (1 other biounit)

Dengue virus 4 NS3 helicase in complex with ssRNA and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 12 residues within 4Å: Chain A: G.29, A.30, G.31, K.32, T.33, K.34, N.162, N.249, R.251, R.296 Ligands: MN.2, CL.3 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.29, A:G.29, A:A.30, A:G.31, A:K.32, A:T.33, A:K.34, A:K.34, A:K.34, A:R.35, A:N.162, A:N.249, A:R.251, A:R.296 Water bridges: A:K.32, A:K.32, A:R.296, A:R.296, A:R.296 Salt bridges: A:K.32, A:R.296, A:R.296

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: T.33, D.117, E.118, G.247 Ligands: ADP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.33, H2O.7, H2O.7, H2O.7, H2O.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: N.249, F.250, R.251, R.296 Ligands: ADP.1 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: I.275, L.276, A.431, A.435 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.276, A:L.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, D. et al., Insights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein. Embo J. (2008)

Release Date

2008-11-25

Peptides

SERINE PROTEASE SUBUNIT NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SERINE PROTEASE SUBUNIT NS3

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